Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   D0T90_RS06325 Genome accession   NZ_CP031699
Coordinates   1357173..1358417 (-) Length   414 a.a.
NCBI ID   WP_269471079.1    Uniprot ID   -
Organism   Neisseria animalis strain ATCC 49930     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1352173..1363417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T90_RS06295 (D0T90_06535) aat 1352309..1353064 (-) 756 WP_123795653.1 leucyl/phenylalanyl-tRNA--protein transferase -
  D0T90_RS06300 (D0T90_06540) lspA 1353233..1353730 (+) 498 WP_123795652.1 signal peptidase II -
  D0T90_RS06305 (D0T90_06545) ispH 1353823..1354791 (+) 969 WP_123795651.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  D0T90_RS10440 - 1354890..1355063 (-) 174 WP_162842984.1 hypothetical protein -
  D0T90_RS06310 (D0T90_06550) yacG 1355418..1355609 (-) 192 WP_123795650.1 DNA gyrase inhibitor YacG -
  D0T90_RS06315 (D0T90_06555) coaE 1355658..1356278 (-) 621 WP_123795649.1 dephospho-CoA kinase -
  D0T90_RS06320 (D0T90_06560) pilD 1356311..1357171 (-) 861 WP_123795648.1 A24 family peptidase Machinery gene
  D0T90_RS06325 (D0T90_06565) pilG 1357173..1358417 (-) 1245 WP_269471079.1 type II secretion system F family protein Machinery gene
  D0T90_RS06330 (D0T90_06570) pilF 1358426..1360105 (-) 1680 WP_123795647.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D0T90_RS06335 (D0T90_06575) - 1360661..1361167 (-) 507 WP_123795646.1 pilin -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45810.87 Da        Isoelectric Point: 9.9076

>NTDB_id=310518 D0T90_RS06325 WP_269471079.1 1357173..1358417(-) (pilG) [Neisseria animalis strain ATCC 49930]
MSRSHKTLAAFFSMGGKDRRFAFEGKNIYTDRLVRGEVVAADEEEARKKLQRRGIRPLRIDKVKTVRTRKITQEDITVFT
RQLATMMKAGLPLLQAFDIIARGHSNPAVTQMLTGIRTDVEQGSSLAVSFGKYPKYFDRFYCNLVAAGETGGVLETLLDK
LATYREKTLAVKRKIKTMMIYPMAILVVSSGLVFVMMRFVLPAFKEIYTNMGAQLPLLTQYAINLSDFVVEYGWLLLVAT
IVAGVSLYRLHEKSYSLQKRTDALLLRTPLFGSIVRKAAIARWSRTLSTLFAAGVPLVEVLDSVAAASGNLLYEEATLDI
RAQVTQGLSLASSMQPTNMFPNMVVQMAAVGEESGALDDMLNKAAEFYEDEVDNLISRLSALIEPIIMIVIGVTVGILLI
AMYLPLLNLGKAVG

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=310518 D0T90_RS06325 WP_269471079.1 1357173..1358417(-) (pilG) [Neisseria animalis strain ATCC 49930]
ATGTCCCGCTCCCATAAAACACTTGCTGCTTTTTTCAGCATGGGCGGAAAAGACCGCCGCTTTGCCTTTGAAGGCAAAAA
TATTTATACCGACCGTCTTGTCCGCGGCGAAGTTGTGGCGGCAGATGAAGAGGAAGCCCGCAAAAAGCTGCAACGACGCG
GTATCCGCCCTTTGCGTATCGACAAGGTAAAAACCGTCCGCACACGCAAGATTACGCAAGAAGACATTACGGTTTTTACC
CGCCAACTAGCCACCATGATGAAAGCGGGGCTGCCGCTGCTCCAAGCATTCGACATCATCGCACGCGGCCACTCCAACCC
TGCGGTCACGCAAATGCTGACCGGTATCCGCACCGATGTGGAACAGGGCAGCTCTCTTGCCGTATCGTTTGGCAAATATC
CGAAATATTTCGACCGTTTTTACTGTAATCTGGTTGCAGCAGGTGAAACCGGCGGCGTATTGGAAACGCTGCTCGACAAG
CTGGCAACTTATCGTGAAAAAACGCTGGCCGTCAAAAGAAAAATTAAAACCATGATGATTTACCCGATGGCGATTCTGGT
GGTGTCGTCAGGCTTGGTGTTTGTCATGATGCGCTTCGTATTGCCTGCTTTCAAAGAAATCTATACCAATATGGGCGCGC
AACTGCCGCTGTTGACGCAATATGCCATCAACCTTTCCGATTTTGTGGTCGAATACGGTTGGCTGCTGCTGGTTGCGACC
ATTGTTGCCGGCGTGTCGCTGTACCGTCTGCATGAAAAATCATACAGCCTGCAAAAGCGCACCGATGCCTTGCTGCTGCG
GACACCACTGTTCGGCAGCATTGTCCGCAAAGCCGCCATCGCCCGCTGGTCGCGTACTTTATCGACGCTCTTTGCCGCCG
GCGTGCCGCTGGTAGAGGTTTTGGACTCGGTTGCCGCCGCTTCGGGCAATCTGCTGTACGAAGAAGCCACCCTCGATATT
CGGGCGCAGGTAACACAAGGCTTGTCGCTGGCTTCCAGTATGCAGCCAACCAATATGTTTCCCAATATGGTGGTGCAAAT
GGCGGCGGTCGGGGAAGAATCCGGCGCGTTGGACGATATGCTCAACAAAGCCGCCGAATTTTATGAAGACGAAGTGGACA
ATCTGATTTCACGGCTTTCCGCCCTGATTGAACCGATTATCATGATTGTCATCGGCGTAACCGTCGGTATCCTGCTGATT
GCCATGTATCTGCCCTTATTGAATTTGGGCAAGGCGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-405)

Type II secretion system (T2SS), protein F (T2SSF)

(79-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

64.987

95.894

0.623
  pilG Neisseria meningitidis 44/76-A

64.484

95.894

0.618
  pilC Pseudomonas stutzeri DSM 10701

45.137

96.86

0.437
  pilC Legionella pneumophila strain ERS1305867

44.361

96.377

0.428
  pilC Acinetobacter baumannii D1279779

43.641

96.86

0.423
  pilC Acinetobacter baylyi ADP1

43.358

96.377

0.418
  pilC Thermus thermophilus HB27

38.56

93.961

0.362

Multiple sequence alignment