Detailed information NTG0310517

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D0T90_RS06320
• Genome accession: NZ_CP031699
• Coordinates: 1356311..1357171 (-)
• Length: 286 a.a.
• NCBI ID: WP_123795648.1
• Uniprot ID: -
• Organism: Neisseria animalis strain ATCC 49930
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1351311..1362171

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0T90_RS06290 (D0T90_06530)	-	1351446..1352288 (-)	843	WP_123795654.1	PhzF family phenazine biosynthesis protein	-
D0T90_RS06295 (D0T90_06535)	aat	1352309..1353064 (-)	756	WP_123795653.1	leucyl/phenylalanyl-tRNA--protein transferase	-
D0T90_RS06300 (D0T90_06540)	lspA	1353233..1353730 (+)	498	WP_123795652.1	signal peptidase II	-
D0T90_RS06305 (D0T90_06545)	ispH	1353823..1354791 (+)	969	WP_123795651.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
D0T90_RS10440	-	1354890..1355063 (-)	174	WP_162842984.1	hypothetical protein	-
D0T90_RS06310 (D0T90_06550)	yacG	1355418..1355609 (-)	192	WP_123795650.1	DNA gyrase inhibitor YacG	-
D0T90_RS06315 (D0T90_06555)	coaE	1355658..1356278 (-)	621	WP_123795649.1	dephospho-CoA kinase	-
D0T90_RS06320 (D0T90_06560)	pilD	1356311..1357171 (-)	861	WP_123795648.1	A24 family peptidase	Machinery gene
D0T90_RS06325 (D0T90_06565)	pilG	1357173..1358417 (-)	1245	WP_269471079.1	type II secretion system F family protein	Machinery gene
D0T90_RS06330 (D0T90_06570)	pilF	1358426..1360105 (-)	1680	WP_123795647.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D0T90_RS06335 (D0T90_06575)	-	1360661..1361167 (-)	507	WP_123795646.1	pilin	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31107.92 Da
• Isoelectric Point: 7.3034

>NTDB_id=310517 D0T90_RS06320 WP_123795648.1 1356311..1357171(-) (pilD) [Neisseria animalis strain ATCC 49930]
MWTFDIYTPFIVPAAALLGLLFGSFLNVVIHRIPIMMERDWTLFAKEHLGLKPSAKEQQPFNLMKPDSHCPECGEKIKAR
HNIPVISYLLLGGKCSLCRTHISLRYPLVELLTAAAFAVVAWQYGASWITLGGWVFTAFLIALAFIDADTHYLPDSLTLP
LVWLGLLFNFADGMVALQSAVLGAVCGYACLWLLCAAYRLLTGQTGMGNGDFKLLAALGAWLGVGVLPVLVFAASLIGIM
GAVLTKTAKGQAFAFGPSLALAGWIIFIAYEPLQQLTDWWLNASGL

Nucleotide

• Length: 861 bp

>NTDB_id=310517 D0T90_RS06320 WP_123795648.1 1356311..1357171(-) (pilD) [Neisseria animalis strain ATCC 49930]
ATGTGGACATTCGATATCTATACGCCGTTTATCGTACCTGCCGCCGCCCTGCTCGGTCTGCTGTTTGGCAGCTTTTTAAA
CGTGGTTATCCACCGCATACCCATCATGATGGAGCGCGATTGGACGCTGTTTGCCAAAGAGCATCTCGGCCTGAAGCCGT
CTGCAAAAGAGCAGCAGCCGTTTAATCTGATGAAGCCGGATTCGCATTGCCCCGAATGCGGAGAAAAAATCAAAGCACGG
CACAATATTCCCGTCATCAGCTATCTGCTGCTCGGTGGCAAATGCAGCCTATGCCGTACGCACATCTCCCTCCGCTATCC
GCTGGTCGAACTGCTGACCGCTGCGGCGTTTGCCGTCGTAGCATGGCAATACGGAGCAAGCTGGATTACGCTCGGCGGCT
GGGTATTCACCGCTTTTCTCATTGCACTGGCCTTCATTGATGCCGATACGCACTATCTGCCCGATTCGCTTACCCTGCCG
CTGGTTTGGCTGGGGCTGCTGTTTAATTTTGCAGACGGCATGGTAGCGCTGCAATCCGCGGTACTCGGTGCTGTATGCGG
CTATGCCTGCCTGTGGTTGCTCTGCGCCGCATACAGATTGCTGACCGGCCAAACCGGTATGGGCAACGGCGATTTCAAAC
TGCTCGCCGCATTGGGCGCATGGCTGGGGGTCGGCGTATTGCCCGTGTTGGTGTTTGCCGCCTCGCTCATCGGCATTATG
GGCGCGGTGTTAACGAAAACCGCCAAAGGGCAGGCTTTCGCCTTCGGCCCCAGTCTGGCATTGGCTGGCTGGATTATCTT
CATTGCCTACGAACCGCTGCAACAGCTTACCGACTGGTGGCTGAATGCCTCGGGGTTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	64.539	98.601	0.636
pilD	Vibrio campbellii strain DS40M4	44.097	100	0.444
pilD	Vibrio cholerae strain A1552	43.158	99.65	0.43
pilD	Acinetobacter baumannii D1279779	47.471	89.86	0.427
pilD	Acinetobacter nosocomialis M2	47.082	89.86	0.423