Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   ES276_RS09720 Genome accession   NZ_CP038252
Coordinates   1928129..1928542 (-) Length   137 a.a.
NCBI ID   WP_000265622.1    Uniprot ID   A0A0H2URX9
Organism   Streptococcus pneumoniae strain TVO_1901936     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1923129..1933542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES276_RS09695 (ES276_10310) - 1923824..1924648 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  ES276_RS09700 (ES276_10315) rnpA 1924623..1924994 (-) 372 WP_000739253.1 ribonuclease P protein component -
  ES276_RS10870 - 1925011..1925142 (-) 132 WP_000768904.1 hypothetical protein -
  ES276_RS09705 (ES276_10320) - 1925143..1926333 (-) 1191 WP_000167757.1 acetate kinase -
  ES276_RS09710 (ES276_10325) comGH 1926384..1927337 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  ES276_RS09715 (ES276_10330) - 1927398..1927992 (-) 595 Protein_1916 class I SAM-dependent methyltransferase -
  ES276_RS09720 (ES276_10335) comGG/cglG 1928129..1928542 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  ES276_RS09725 (ES276_10340) comGF/cglF 1928520..1928981 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  ES276_RS09730 (ES276_10345) comGE/cglE 1928944..1929246 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  ES276_RS09735 (ES276_10350) comGD/cglD 1929209..1929613 (-) 405 WP_000588028.1 competence type IV pilus minor pilin ComGD Machinery gene
  ES276_RS09740 (ES276_10355) comGC/cglC 1929606..1929932 (-) 327 WP_000738627.1 comG operon protein ComGC Machinery gene
  ES276_RS09745 (ES276_10360) comGB/cglB 1929934..1930950 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  ES276_RS09750 (ES276_10365) comGA/cglA/cilD 1930898..1931839 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  ES276_RS09755 (ES276_10370) - 1931915..1932280 (-) 366 WP_000286415.1 DUF1033 family protein -
  ES276_RS09760 (ES276_10375) - 1932431..1933489 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 16003.46 Da        Isoelectric Point: 10.2472

>NTDB_id=310270 ES276_RS09720 WP_000265622.1 1928129..1928542(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901936]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKVEQESGEQFFNLGQVSYQNKK
TGLVTRVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=310270 ES276_RS09720 WP_000265622.1 1928129..1928542(-) (comGG/cglG) [Streptococcus pneumoniae strain TVO_1901936]
GTGTGGAAAAAGAAAAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCTATGGCTA
AACGAACCAAAGATAAGGTTGAGCAAGAAAGTGGGGAACAGTTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACTGGCTTAGTGACGAGGGTTCGTACGGATAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2URX9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

100

100

1

  comGG/cglG Streptococcus pneumoniae D39

100

100

1

  comGG/cglG Streptococcus pneumoniae R6

100

100

1

  comGG/cglG Streptococcus pneumoniae TIGR4

100

100

1

  comGG/cglG Streptococcus mitis SK321

87.591

100

0.876

  comGG/cglG Streptococcus mitis NCTC 12261

89.256

88.321

0.788

  comGG Streptococcus mutans UA140

38.806

97.81

0.38

  comGG Streptococcus mutans UA159

38.806

97.81

0.38