Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH628_RS04450 | Genome accession | NZ_CP031681 |
| Coordinates | 832677..833126 (+) | Length | 149 a.a. |
| NCBI ID | WP_011271973.1 | Uniprot ID | Q4QNP4 |
| Organism | Haemophilus influenzae strain P669-6977 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 827677..838126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH628_RS04430 (CH628_04430) | rsmE | 828142..828879 (-) | 738 | WP_038440782.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH628_RS04435 (CH628_04435) | lnt | 828932..830458 (-) | 1527 | WP_080291958.1 | apolipoprotein N-acyltransferase | - |
| CH628_RS04440 (CH628_04440) | corC | 830481..831380 (-) | 900 | WP_005656283.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH628_RS04445 (CH628_04445) | ampD | 832002..832562 (-) | 561 | WP_011271974.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH628_RS04450 (CH628_04450) | pilA | 832677..833126 (+) | 450 | WP_011271973.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CH628_RS04455 (CH628_04455) | pilB | 833123..834517 (+) | 1395 | WP_011271972.1 | GspE/PulE family protein | Machinery gene |
| CH628_RS04460 (CH628_04460) | pilC | 834514..835734 (+) | 1221 | WP_011271971.1 | type II secretion system F family protein | Machinery gene |
| CH628_RS04465 (CH628_04465) | pilD | 835731..836423 (+) | 693 | WP_105886719.1 | A24 family peptidase | Machinery gene |
| CH628_RS04470 (CH628_04470) | rho | 836477..837739 (-) | 1263 | WP_015701557.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15572.89 Da Isoelectric Point: 8.0922
>NTDB_id=309887 CH628_RS04450 WP_011271973.1 832677..833126(+) (pilA) [Haemophilus influenzae strain P669-6977]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=309887 CH628_RS04450 WP_011271973.1 832677..833126(+) (pilA) [Haemophilus influenzae strain P669-6977]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
91.946 |
100 |
0.919 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
41.497 |
98.658 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.497 |
98.658 |
0.409 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |