Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EKI57_RS23720 Genome accession   NZ_CP037943
Coordinates   4645727..4646332 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CFSAN027343     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4640727..4651332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKI57_RS23690 (EKI57_23690) rsmS 4641432..4641593 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  EKI57_RS23695 (EKI57_23695) priC 4641607..4642134 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  EKI57_RS23700 (EKI57_23700) ybaN 4642204..4642581 (+) 378 WP_001188905.1 DUF454 family protein -
  EKI57_RS23705 (EKI57_23705) apt 4642734..4643285 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EKI57_RS23710 (EKI57_23710) dnaX 4643414..4645345 (+) 1932 WP_133394965.1 DNA polymerase III subunit gamma/tau -
  EKI57_RS23715 (EKI57_23715) ybaB 4645398..4645727 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EKI57_RS23720 (EKI57_23720) recR 4645727..4646332 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EKI57_RS23725 (EKI57_23725) htpG 4646442..4648316 (+) 1875 WP_000678194.1 molecular chaperone HtpG -
  EKI57_RS23730 (EKI57_23730) adk 4648497..4649141 (+) 645 WP_001220233.1 adenylate kinase -
  EKI57_RS23735 (EKI57_23735) hemH 4649377..4650339 (+) 963 WP_001250125.1 ferrochelatase -
  EKI57_RS23740 (EKI57_23740) aes 4650336..4651295 (-) 960 WP_000801832.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=309079 EKI57_RS23720 WP_001195025.1 4645727..4646332(+) (recR) [Escherichia coli strain CFSAN027343]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=309079 EKI57_RS23720 WP_001195025.1 4645727..4646332(+) (recR) [Escherichia coli strain CFSAN027343]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment