Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DZ066_RS09485 Genome accession   NZ_CP031619
Coordinates   1850602..1851873 (-) Length   423 a.a.
NCBI ID   WP_011285266.1    Uniprot ID   Q48QW6
Organism   Streptococcus pyogenes strain MGAS29284     
Function   require for competence (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1840880..1869173 1850602..1851873 within 0


Gene organization within MGE regions


Location: 1840880..1869173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZ066_RS09435 (DZ066_09420) nrdG 1840880..1841494 (-) 615 WP_002982219.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DZ066_RS09440 (DZ066_09425) - 1841494..1842003 (-) 510 WP_011285262.1 GNAT family N-acetyltransferase -
  DZ066_RS09445 (DZ066_09430) - 1842012..1842947 (-) 936 WP_002992828.1 Gfo/Idh/MocA family oxidoreductase -
  DZ066_RS10165 - 1842976..1843122 (-) 147 WP_002982210.1 hypothetical protein -
  DZ066_RS09450 (DZ066_09435) nrdD 1843304..1845502 (-) 2199 WP_011285263.1 anaerobic ribonucleoside-triphosphate reductase -
  DZ066_RS09455 (DZ066_09440) - 1845599..1847158 (-) 1560 WP_011285264.1 membrane protein -
  DZ066_RS09460 (DZ066_09445) - 1847572..1847877 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  DZ066_RS09465 (DZ066_09450) ruvX 1847889..1848308 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  DZ066_RS09470 (DZ066_09455) - 1848305..1848574 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  DZ066_RS09475 (DZ066_09460) spx 1848688..1849086 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  DZ066_RS09480 (DZ066_09465) recA 1849377..1850513 (-) 1137 WP_011285265.1 recombinase RecA Machinery gene
  DZ066_RS09485 (DZ066_09470) cinA 1850602..1851873 (-) 1272 WP_011285266.1 competence/damage-inducible protein A Machinery gene
  DZ066_RS09490 (DZ066_09475) - 1851942..1852502 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  DZ066_RS09495 (DZ066_09480) ruvA 1852512..1853108 (-) 597 WP_011285268.1 Holliday junction branch migration protein RuvA -
  DZ066_RS09500 (DZ066_09485) - 1853110..1854330 (-) 1221 WP_011285269.1 MFS transporter -
  DZ066_RS09505 (DZ066_09490) mutL 1854341..1856323 (-) 1983 WP_021340699.1 DNA mismatch repair endonuclease MutL -
  DZ066_RS09510 (DZ066_09495) - 1856418..1857569 (-) 1152 WP_003058754.1 site-specific integrase -
  DZ066_RS10330 (DZ066_09500) - 1857818..1857961 (+) 144 WP_011185066.1 putative holin-like toxin -
  DZ066_RS09520 (DZ066_09505) - 1858823..1859590 (-) 768 WP_003058809.1 S24 family peptidase -
  DZ066_RS09525 (DZ066_09510) - 1859744..1859950 (+) 207 WP_002992503.1 helix-turn-helix transcriptional regulator -
  DZ066_RS09530 (DZ066_09515) - 1859984..1860157 (+) 174 Protein_1780 helix-turn-helix transcriptional regulator -
  DZ066_RS09535 (DZ066_09520) - 1860205..1860612 (+) 408 WP_002992501.1 hypothetical protein -
  DZ066_RS10335 - 1860625..1860747 (+) 123 WP_011285272.1 hypothetical protein -
  DZ066_RS09540 (DZ066_09525) - 1861030..1861551 (+) 522 WP_002992498.1 Rha family transcriptional regulator -
  DZ066_RS09545 (DZ066_09530) - 1861799..1861972 (+) 174 WP_000132665.1 hypothetical protein -
  DZ066_RS09550 (DZ066_09535) - 1862134..1862565 (+) 432 WP_136302445.1 hypothetical protein -
  DZ066_RS09555 (DZ066_09540) - 1862667..1862999 (+) 333 WP_011285276.1 hypothetical protein -
  DZ066_RS09560 (DZ066_09545) - 1862999..1863190 (+) 192 WP_021340709.1 hypothetical protein -
  DZ066_RS09565 (DZ066_09550) - 1863202..1863531 (+) 330 WP_003058810.1 hypothetical protein -
  DZ066_RS09570 (DZ066_09555) - 1863534..1863806 (+) 273 WP_010922766.1 hypothetical protein -
  DZ066_RS09575 (DZ066_09560) - 1863807..1864673 (+) 867 WP_011285278.1 primase alpha helix C-terminal domain-containing protein -
  DZ066_RS09580 (DZ066_09565) - 1864685..1866079 (+) 1395 WP_011285279.1 VapE domain-containing protein -
  DZ066_RS09585 (DZ066_09570) - 1866373..1866627 (+) 255 WP_011285280.1 hypothetical protein -
  DZ066_RS09590 (DZ066_09575) - 1866624..1866797 (+) 174 WP_011285281.1 hypothetical protein -
  DZ066_RS10170 - 1866803..1866976 (+) 174 WP_011285282.1 hypothetical protein -
  DZ066_RS09595 (DZ066_09580) - 1866978..1867487 (+) 510 WP_030126555.1 hypothetical protein -
  DZ066_RS09600 (DZ066_09585) - 1867561..1868049 (+) 489 WP_002992480.1 hypothetical protein -
  DZ066_RS09605 (DZ066_09595) - 1868453..1868815 (+) 363 WP_011285284.1 DUF1492 domain-containing protein -
  DZ066_RS09610 (DZ066_09600) - 1868790..1869173 (+) 384 WP_011285285.1 ArpU family phage packaging/lysis transcriptional regulator -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45990.74 Da        Isoelectric Point: 4.8322

>NTDB_id=308124 DZ066_RS09485 WP_011285266.1 1850602..1851873(-) (cinA) [Streptococcus pyogenes strain MGAS29284]
MKAELIAVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVITTASQRSDLVILCGGLGPTKDDLTKQT
LAKYLRKDLVYDEQACQKLDDFFAKRKPSSRTPNNERQAQVIEGSIPLPNKTGLAVGGFITVDGISYVVLPGPPSELKPM
VNEELVPLLSKQYSTLYSKVLRFFGIGESQLVTVLSDFIENQTDPTIAPYAKTGEVTLRLSTKTENQALADKKLGQLEAQ
LLSRKTLEGQPLADVFYGYGEDNSLARETFELLVKYDKTITAAESLTAGLFQSTLASFPGASQVFNGGFVTYSMEEKAKM
LGLPLEELKSHGVVSAYTAEGMAEQARLLTGADIGVSLTGVAGPDMLEEQPAGTVFIGLATQNKVESIKVLISGRSRLDV
RYIATLHAFNMVRKTLLKLENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=308124 DZ066_RS09485 WP_011285266.1 1850602..1851873(-) (cinA) [Streptococcus pyogenes strain MGAS29284]
ATGAAAGCTGAACTGATTGCAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGACAACGAGGAGCGTTTACTTTCAGTGATTA
CAACTGCTAGTCAGCGTAGTGACTTGGTAATTTTATGTGGTGGCCTTGGTCCAACGAAAGATGATTTAACCAAACAAACT
TTAGCAAAGTACCTTAGGAAAGACTTGGTTTATGATGAGCAAGCTTGTCAGAAACTAGATGACTTTTTTGCTAAGCGCAA
GCCTTCATCACGGACACCAAATAATGAGCGACAGGCACAAGTGATTGAAGGGTCAATCCCTTTGCCAAATAAAACTGGTC
TTGCGGTTGGTGGGTTCATCACAGTCGATGGTATTAGTTATGTTGTCTTACCGGGTCCTCCAAGTGAATTGAAGCCGATG
GTAAATGAAGAATTGGTACCACTTCTGTCAAAACAATACAGTACATTGTATTCAAAGGTACTACGCTTTTTTGGTATTGG
GGAAAGTCAGTTGGTAACAGTCTTGTCAGATTTTATTGAGAATCAAACTGATCCAACCATTGCTCCGTATGCTAAGACTG
GCGAAGTGACTCTTCGCTTATCAACAAAAACTGAAAACCAAGCTCTGGCAGATAAAAAGTTAGGTCAGCTAGAAGCGCAG
CTACTATCCCGAAAAACTCTTGAAGGTCAACCCTTAGCTGATGTCTTTTATGGCTATGGGGAGGATAATTCCTTAGCGCG
TGAGACATTTGAGCTCTTAGTAAAATATGATAAGACAATTACAGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTCCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTGACTTATAGCATGGAAGAAAAAGCGAAAATG
CTAGGCCTTCCTTTAGAGGAGTTGAAATCGCATGGCGTTGTTAGTGCTTATACAGCCGAGGGGATGGCGGAGCAAGCAAG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCCGGACCAGATATGTTGGAGGAACAGCCTGCAGGTA
CAGTTTTCATTGGCCTTGCCACTCAAAATAAGGTAGAATCAATAAAGGTTTTGATTAGCGGGCGAAGTCGTTTGGATGTG
CGCTATATCGCTACTTTACATGCCTTTAATATGGTCCGTAAAACTTTATTAAAACTTGAGAATTTGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Competence-damaged protein (CinA)

(263-416)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48QW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

69.74

100

0.697
  cinA Streptococcus mitis SK321

70.024

98.582

0.69
  cinA Streptococcus mitis NCTC 12261

69.544

98.582

0.686
  cinA Streptococcus pneumoniae TIGR4

68.585

98.582

0.676
  cinA Streptococcus pneumoniae Rx1

68.585

98.582

0.676
  cinA Streptococcus pneumoniae R6

68.585

98.582

0.676
  cinA Streptococcus pneumoniae D39

68.345

98.582

0.674
  cinA Streptococcus suis isolate S10

53.125

98.345

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

46.651

98.818

0.461

Multiple sequence alignment