Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AB849_RS13185 Genome accession   NZ_CP036487
Coordinates   2589014..2589598 (-) Length   194 a.a.
NCBI ID   WP_037993559.1    Uniprot ID   A0ABS0QF03
Organism   Thermoactinomyces vulgaris strain CDF     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2584014..2594598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS13170 (AB849_013170) lonB 2584656..2586317 (-) 1662 WP_049719893.1 ATP-dependent protease LonB -
  AB849_RS13175 (AB849_013175) - 2586440..2587558 (-) 1119 WP_231564566.1 lipid II:glycine glycyltransferase FemX -
  AB849_RS13180 (AB849_013180) clpX 2587731..2588996 (-) 1266 WP_037993558.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  AB849_RS13185 (AB849_013185) clpP 2589014..2589598 (-) 585 WP_037993559.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AB849_RS13190 (AB849_013190) tig 2589678..2590976 (-) 1299 WP_037993561.1 trigger factor -
  AB849_RS13195 (AB849_013195) - 2591397..2592329 (-) 933 WP_049719892.1 NAD(P)H-dependent flavin oxidoreductase -
  AB849_RS13200 (AB849_013200) - 2592382..2592714 (-) 333 WP_231564560.1 hypothetical protein -
  AB849_RS13205 (AB849_013205) - 2592740..2594476 (-) 1737 WP_049719891.1 ABC1 kinase family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21364.56 Da        Isoelectric Point: 5.7227

>NTDB_id=307944 AB849_RS13185 WP_037993559.1 2589014..2589598(-) (clpP) [Thermoactinomyces vulgaris strain CDF]
MPLVPMVVEQTNRGERSYDIYSRLLKDRIIFLGGPIDDNVANLVVAQLLFLSAEDPEKDIYLYINSPGGSVTAGMAIYDT
MNHVQPQVSTICVGLAASMGAFLLAAGAKGKRLALPNSEVMIHQPLGGARGQATDIKIHADWILKTKERINRILSERTGQ
PIDKIARDTDRDYFMSAEEAKEYGIVDQVMATNR

Nucleotide


Download         Length: 585 bp        

>NTDB_id=307944 AB849_RS13185 WP_037993559.1 2589014..2589598(-) (clpP) [Thermoactinomyces vulgaris strain CDF]
ATGCCTTTGGTGCCAATGGTGGTAGAACAGACCAATCGGGGAGAGCGCTCCTACGATATCTATTCCAGACTGTTGAAAGA
CCGCATTATCTTTTTGGGAGGCCCCATCGATGATAATGTGGCCAATTTGGTTGTTGCCCAATTGCTGTTTTTGAGTGCGG
AAGACCCGGAAAAAGACATTTATTTGTACATAAATTCACCAGGTGGTTCCGTAACCGCCGGAATGGCGATTTACGACACC
ATGAATCATGTTCAGCCGCAAGTCTCCACCATTTGCGTCGGCCTTGCCGCCAGCATGGGAGCCTTTTTGCTGGCCGCCGG
TGCGAAAGGGAAACGCTTGGCGCTGCCAAACAGCGAAGTGATGATTCACCAACCGTTGGGAGGCGCCCGGGGACAAGCGA
CAGACATAAAAATTCATGCAGACTGGATCCTGAAGACCAAAGAGAGAATCAACCGGATCTTGTCTGAAAGAACGGGGCAA
CCGATTGACAAGATCGCCCGGGACACGGACCGCGATTATTTCATGAGTGCCGAAGAGGCCAAGGAATACGGCATCGTGGA
TCAGGTGATGGCCACCAATCGTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

73.158

97.938

0.716
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.553

96.907

0.655
  clpP Streptococcus pneumoniae D39

58.031

99.485

0.577
  clpP Streptococcus pneumoniae TIGR4

58.031

99.485

0.577
  clpP Streptococcus pneumoniae R6

58.031

99.485

0.577
  clpP Streptococcus pneumoniae Rx1

58.031

99.485

0.577
  clpP Streptococcus pyogenes MGAS315

57.513

99.485

0.572
  clpP Streptococcus pyogenes JRS4

57.513

99.485

0.572
  clpP Streptococcus thermophilus LMG 18311

57.216

100

0.572
  clpP Streptococcus thermophilus LMD-9

57.216

100

0.572
  clpP Streptococcus mutans UA159

56.186

100

0.562
  clpP Lactococcus lactis subsp. cremoris KW2

55.44

99.485

0.552
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.886

99.485

0.536