Detailed information NTG0307943

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AB849_RS13180
• Genome accession: NZ_CP036487
• Coordinates: 2587731..2588996 (-)
• Length: 421 a.a.
• NCBI ID: WP_037993558.1
• Uniprot ID: -
• Organism: Thermoactinomyces vulgaris strain CDF
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2582731..2593996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB849_RS13170 (AB849_013170)	lonB	2584656..2586317 (-)	1662	WP_049719893.1	ATP-dependent protease LonB	-
AB849_RS13175 (AB849_013175)	-	2586440..2587558 (-)	1119	WP_231564566.1	lipid II:glycine glycyltransferase FemX	-
AB849_RS13180 (AB849_013180)	clpX	2587731..2588996 (-)	1266	WP_037993558.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
AB849_RS13185 (AB849_013185)	clpP	2589014..2589598 (-)	585	WP_037993559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AB849_RS13190 (AB849_013190)	tig	2589678..2590976 (-)	1299	WP_037993561.1	trigger factor	-
AB849_RS13195 (AB849_013195)	-	2591397..2592329 (-)	933	WP_049719892.1	NAD(P)H-dependent flavin oxidoreductase	-
AB849_RS13200 (AB849_013200)	-	2592382..2592714 (-)	333	WP_231564560.1	hypothetical protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46767.99 Da
• Isoelectric Point: 4.7455

>NTDB_id=307943 AB849_RS13180 WP_037993558.1 2587731..2588996(-) (clpX) [Thermoactinomyces vulgaris strain CDF]
MFKFNEEKGQLKCSFCGKSQDQVRKLVAGPGVYICDECIELCNEIVEEELGNEEEIDLQNLPKPQEICSILEEYVIGQEE
AKKALSVAVYNHYKRINSSQKSDDVELQKSNIMMVGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDIEKAERGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTSNI
LFICGGAFDGLETIIKRRIGKKVIGFGMDQQNVNMKPGEYLKLVLPEDLLKFGLIPEFVGRLPVISTLEPLDEQALVRIL
LEPKNALVKQYKKLLEMDNVELSFEQDALEAIAKEAIKRKTGARGLRAIIESIMLDVMFELPSRDDIVKCVITKDTVVQG
GSPKLYTREGRVITTKKEESA

Nucleotide

• Length: 1266 bp

>NTDB_id=307943 AB849_RS13180 WP_037993558.1 2587731..2588996(-) (clpX) [Thermoactinomyces vulgaris strain CDF]
ATGTTCAAGTTCAATGAAGAAAAAGGACAATTGAAATGTTCTTTCTGTGGAAAATCCCAGGATCAGGTGCGCAAGCTGGT
CGCCGGACCTGGTGTATATATCTGTGACGAATGCATTGAATTGTGCAATGAAATCGTGGAAGAAGAATTGGGCAATGAAG
AAGAAATTGATTTGCAAAACTTGCCCAAACCACAGGAGATCTGCTCCATTCTGGAGGAATACGTCATTGGTCAGGAAGAA
GCGAAGAAAGCATTGTCCGTTGCGGTTTACAACCACTACAAACGGATCAATTCTTCGCAGAAATCCGATGATGTTGAACT
GCAAAAAAGCAACATCATGATGGTGGGGCCGACGGGGAGCGGGAAAACCCTCCTTGCCCAAACATTGGCCCGCATCCTGA
ATGTCCCGTTTGCGATTGCGGACGCGACGTCGCTGACGGAAGCGGGTTATGTCGGGGAAGACGTGGAAAACATCCTGCTC
AAATTGATCCAAGCGGCGGATTACGATATTGAAAAAGCGGAACGCGGAATCATCTACATTGATGAAATCGACAAAGTTGC
CCGCAAATCTGAAAATCCGTCGATCACCCGTGACGTGTCCGGTGAGGGTGTCCAACAGGCGTTGCTGAAGATTTTGGAAG
GAACCGTTGCCAGTGTGCCACCGCAAGGAGGGCGCAAACACCCGCATCAGGAGTTCATCCAAATTGACACCAGCAACATC
TTGTTTATATGCGGGGGCGCTTTTGACGGATTGGAAACGATCATTAAACGGCGGATCGGCAAGAAAGTGATCGGTTTTGG
AATGGATCAGCAAAACGTCAACATGAAACCGGGCGAATATCTGAAGCTGGTGTTGCCTGAAGACCTCTTGAAGTTTGGTC
TCATTCCGGAATTTGTGGGAAGGCTTCCGGTCATTTCTACATTGGAACCGCTCGATGAGCAAGCGCTAGTGCGCATCTTG
CTCGAGCCCAAAAATGCACTGGTGAAACAGTACAAAAAACTGTTGGAAATGGACAATGTCGAATTGTCCTTTGAACAAGA
CGCGCTGGAGGCCATTGCCAAAGAGGCCATCAAGCGCAAAACGGGTGCCCGGGGACTCAGGGCGATCATCGAGTCCATCA
TGTTGGATGTCATGTTTGAATTGCCTTCGCGCGATGATATCGTCAAATGTGTCATCACCAAGGACACGGTGGTGCAAGGA
GGAAGCCCGAAACTCTATACCCGTGAAGGGCGCGTCATTACGACAAAAAAAGAAGAATCTGCTTGA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (108-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	67.168	94.774	0.637
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.317	97.387	0.558