Detailed information NTG0307355

Bioinformatically predicted

Overview

• Name: covR
• Type: Regulator
• Locus tag: L3107_RS07900
• Genome accession: NZ_CP031538
• Coordinates: 1555894..1556586 (-)
• Length: 230 a.a.
• NCBI ID: WP_011676631.1
• Uniprot ID: A0A0M2ZTN8
• Organism: Lactococcus cremoris strain 3107
• Function: repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1550894..1561586

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3107_RS07880 (L3107_1538)	murD	1551038..1552387 (-)	1350	WP_021165520.1	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	-
L3107_RS07885 (L3107_1539)	-	1552556..1552897 (-)	342	WP_011676628.1	P-II family nitrogen regulator	-
L3107_RS07890 (L3107_1540)	-	1552982..1554223 (-)	1242	WP_015082643.1	ammonium transporter	-
L3107_RS07895 (L3107_1541)	covS	1554409..1555881 (-)	1473	WP_063283897.1	HAMP domain-containing histidine kinase	Regulator
L3107_RS07900 (L3107_1542)	covR	1555894..1556586 (-)	693	WP_011676631.1	response regulator transcription factor	Regulator
L3107_RS07905 (L3107_1543)	-	1556743..1557273 (-)	531	WP_011834860.1	DUF177 domain-containing protein	-
L3107_RS07910 (L3107_1544)	-	1557406..1557651 (-)	246	WP_011676633.1	type B 50S ribosomal protein L31	-
L3107_RS07915	-	1557975..1558337 (-)	363	Protein_1548	TIGR02328 family protein	-
L3107_RS07920 (L3107_1546)	-	1558574..1559485 (-)	912	Protein_1549	CHAP domain-containing protein	-
L3107_RS07925 (L3107_1547)	-	1559578..1560414 (-)	837	WP_021165524.1	metallophosphoesterase	-
L3107_RS07930 (L3107_1548)	arsC	1560526..1560930 (-)	405	WP_021165525.1	arsenate reductase (thioredoxin)	-

Sequence

Protein

• Length: 230 a.a.
• Molecular weight: 26654.33 Da
• Isoelectric Point: 5.1273

>NTDB_id=307355 L3107_RS07900 WP_011676631.1 1555894..1556586(-) (covR) [Lactococcus cremoris strain 3107]
MASKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFEVARRLRKEKDTPIIMM
TARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEHGHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRRE
YDLLLTLMQNVGDVVTREHLVSQVWGYEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVMRERK

Nucleotide

• Length: 693 bp

>NTDB_id=307355 L3107_RS07900 WP_011676631.1 1555894..1556586(-) (covR) [Lactococcus cremoris strain 3107]
ATGGCATCAAAGAAAATTTTGATTATTGAGGATGAAAAGAATTTAGCTCGTTTCGTCTCATTAGAATTAGAGCATGAAGG
CTATGCCACTGAGATTAAAGATAACGGACGTTCTGGGCTTGAAGAAGCAACTTCAAAAGATTATGATTTAATCTTGCTTG
ATTTGATGCTTCCTGAACTTGATGGTTTTGAAGTTGCCCGCCGTTTGCGCAAAGAAAAAGATACTCCAATTATTATGATG
ACCGCGCGTGATTCAACAATGGACCGTGTTGCCGGTCTTGATATTGGAGCAGATGATTATATTACTAAGCCTTTTGCGAT
TGAAGAACTTTTGGCTCGTGTTCGTGCATTCTTCCGTCGTGAAGAACATGGTCATGCTGTAGAACGTGCTGAAAACACTT
CTTTTCGTGATCTTGTAATTGACAAAACAAATCGTACCGTTCACCGCGGTAAAAAAGTAATTGATTTGACGCGTCGTGAA
TACGATCTTCTTTTGACGTTGATGCAAAATGTTGGGGATGTTGTCACTCGCGAACATTTAGTTTCACAAGTTTGGGGATA
TGAAGAAGGAACGGAAACAAATGTTGTTGATGTATATATCCGCTATCTTAGAAATAAAATTGATGTTGAAGGACAAGACA
GCTATATTCAAACCGTTCGTGGTTTGGGTTATGTGATGCGTGAACGCAAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (153-226)

3D structure

• AlphaFold DB: A0A0M2ZTN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
covR	Lactococcus lactis subsp. lactis strain DGCC12653	99.565	100	0.996
covR	Streptococcus salivarius strain HSISS4	68.421	99.13	0.678
vicR	Streptococcus mutans UA159	45.887	100	0.461
micA	Streptococcus pneumoniae Cp1015	43.478	100	0.435
ciaR	Streptococcus mutans UA159	37.611	98.261	0.37
ciaR	Streptococcus pneumoniae Rx1	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae D39	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae R6	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae TIGR4	36.726	98.261	0.361