Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DWG18_RS00850 | Genome accession | NZ_CP031413 |
| Coordinates | 168742..169995 (-) | Length | 417 a.a. |
| NCBI ID | WP_115644634.1 | Uniprot ID | A0A345ZGV2 |
| Organism | Lysobacter sp. TY2-98 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 163742..174995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DWG18_RS00835 (DWG18_00835) | - | 166263..167225 (+) | 963 | WP_115644632.1 | Nudix family hydrolase | - |
| DWG18_RS00840 (DWG18_00840) | coaE | 167245..167856 (+) | 612 | WP_115647960.1 | dephospho-CoA kinase | - |
| DWG18_RS00845 (DWG18_00845) | - | 167875..168738 (-) | 864 | WP_115644633.1 | A24 family peptidase | - |
| DWG18_RS00850 (DWG18_00850) | pilC | 168742..169995 (-) | 1254 | WP_115644634.1 | type II secretion system F family protein | Machinery gene |
| DWG18_RS00855 (DWG18_00855) | pilB | 170007..171707 (-) | 1701 | WP_115647961.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DWG18_RS00860 (DWG18_00860) | - | 171956..172807 (+) | 852 | WP_115644635.1 | glycosyltransferase family 2 protein | - |
| DWG18_RS00865 (DWG18_00865) | - | 172869..173942 (+) | 1074 | WP_162823628.1 | glycosyltransferase family 4 protein | - |
| DWG18_RS00870 (DWG18_00870) | - | 173982..174893 (-) | 912 | WP_162823629.1 | glycosyltransferase | - |
Sequence
Protein
Download Length: 417 a.a. Molecular weight: 45219.42 Da Isoelectric Point: 10.2830
>NTDB_id=306557 DWG18_RS00850 WP_115644634.1 168742..169995(-) (pilC) [Lysobacter sp. TY2-98]
MSASRSTAKTTARAGDGMQTFTWVGKDKRGVVMKGETPAKNINLVKAELRRQGITPQTVKPKGKPLFGAAGSAIKARDIA
IFSRQIATMMKSGVPIVGALEIIANGNKNPRIQKLVNTIRADIQGGQSFSEALGKHPVYFDELYQNLVRAGESAGVLETV
LDTVATYKENLEALKSKIKKAMFYPIMVVAVALLVSAILLVFVVPQFEDVFKSFGADLPAFTQMVVNLSRFMVAWWWLML
VGAIGAVVAFIAAKKRSVAFQHFLDRLILKVPVIGQIMHNSAIARFSRTLGVTFRAGVPLVEAMDTVAGATGNIVYEQAV
LRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPMIMVFLGVVVGG
MVVAMYLPIFKLASVVG
MSASRSTAKTTARAGDGMQTFTWVGKDKRGVVMKGETPAKNINLVKAELRRQGITPQTVKPKGKPLFGAAGSAIKARDIA
IFSRQIATMMKSGVPIVGALEIIANGNKNPRIQKLVNTIRADIQGGQSFSEALGKHPVYFDELYQNLVRAGESAGVLETV
LDTVATYKENLEALKSKIKKAMFYPIMVVAVALLVSAILLVFVVPQFEDVFKSFGADLPAFTQMVVNLSRFMVAWWWLML
VGAIGAVVAFIAAKKRSVAFQHFLDRLILKVPVIGQIMHNSAIARFSRTLGVTFRAGVPLVEAMDTVAGATGNIVYEQAV
LRMRDDVAVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDTMLFKVAEFYEQEVNNAVDALSSLLEPMIMVFLGVVVGG
MVVAMYLPIFKLASVVG
Nucleotide
Download Length: 1254 bp
>NTDB_id=306557 DWG18_RS00850 WP_115644634.1 168742..169995(-) (pilC) [Lysobacter sp. TY2-98]
ATGTCCGCGAGCCGCTCGACAGCCAAGACCACCGCCCGCGCCGGTGACGGAATGCAGACCTTCACCTGGGTCGGCAAGGA
CAAGCGTGGCGTGGTGATGAAGGGCGAGACGCCCGCGAAGAACATCAACCTCGTCAAGGCGGAGCTGCGTCGCCAGGGCA
TCACTCCGCAGACGGTGAAGCCGAAGGGAAAACCCCTGTTCGGCGCCGCCGGCAGTGCGATCAAGGCACGTGACATTGCG
ATCTTCAGTCGTCAGATCGCGACCATGATGAAGTCGGGCGTTCCGATCGTTGGCGCACTGGAAATCATCGCGAACGGCAA
CAAGAACCCGCGAATTCAGAAGCTGGTCAACACGATCCGCGCCGACATCCAGGGCGGCCAGTCATTCTCGGAGGCGTTGG
GCAAGCATCCGGTCTATTTCGATGAGCTTTACCAGAATCTTGTGCGCGCCGGCGAATCGGCAGGCGTACTCGAGACGGTG
CTCGACACCGTTGCGACGTACAAGGAAAACCTTGAAGCGCTTAAGAGCAAGATCAAGAAGGCCATGTTCTATCCGATCAT
GGTCGTTGCCGTGGCCCTTCTCGTCAGCGCGATTTTGCTGGTATTCGTCGTTCCCCAATTCGAAGACGTATTCAAGAGTT
TCGGTGCGGATCTACCTGCATTCACTCAGATGGTCGTGAACCTGAGTCGATTCATGGTGGCGTGGTGGTGGTTGATGCTG
GTCGGTGCCATCGGTGCGGTGGTCGCGTTCATCGCAGCCAAGAAGCGGTCGGTGGCCTTCCAACACTTCCTCGATCGCCT
GATCTTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACTCGGCGATTGCGCGTTTCTCGCGCACGCTCGGCGTCACCT
TCCGCGCGGGCGTCCCGCTTGTCGAGGCAATGGATACCGTGGCGGGCGCCACGGGCAACATCGTCTACGAACAAGCGGTG
CTGCGCATGCGTGACGACGTCGCCGTCGGCTATCCAGTCAATGTCGCGATGAAGCAGACGAATCTGTTTCCACACATGGT
CATCCAGATGACCGCGATCGGCGAAGAGGCTGGCGCGCTCGATACGATGCTGTTCAAGGTCGCGGAGTTCTATGAGCAGG
AGGTCAACAATGCGGTCGACGCGCTGTCGAGCCTGCTGGAACCGATGATCATGGTGTTCCTCGGCGTCGTGGTCGGTGGC
ATGGTGGTCGCGATGTACCTGCCGATCTTCAAGCTGGCCTCGGTCGTCGGCTGA
ATGTCCGCGAGCCGCTCGACAGCCAAGACCACCGCCCGCGCCGGTGACGGAATGCAGACCTTCACCTGGGTCGGCAAGGA
CAAGCGTGGCGTGGTGATGAAGGGCGAGACGCCCGCGAAGAACATCAACCTCGTCAAGGCGGAGCTGCGTCGCCAGGGCA
TCACTCCGCAGACGGTGAAGCCGAAGGGAAAACCCCTGTTCGGCGCCGCCGGCAGTGCGATCAAGGCACGTGACATTGCG
ATCTTCAGTCGTCAGATCGCGACCATGATGAAGTCGGGCGTTCCGATCGTTGGCGCACTGGAAATCATCGCGAACGGCAA
CAAGAACCCGCGAATTCAGAAGCTGGTCAACACGATCCGCGCCGACATCCAGGGCGGCCAGTCATTCTCGGAGGCGTTGG
GCAAGCATCCGGTCTATTTCGATGAGCTTTACCAGAATCTTGTGCGCGCCGGCGAATCGGCAGGCGTACTCGAGACGGTG
CTCGACACCGTTGCGACGTACAAGGAAAACCTTGAAGCGCTTAAGAGCAAGATCAAGAAGGCCATGTTCTATCCGATCAT
GGTCGTTGCCGTGGCCCTTCTCGTCAGCGCGATTTTGCTGGTATTCGTCGTTCCCCAATTCGAAGACGTATTCAAGAGTT
TCGGTGCGGATCTACCTGCATTCACTCAGATGGTCGTGAACCTGAGTCGATTCATGGTGGCGTGGTGGTGGTTGATGCTG
GTCGGTGCCATCGGTGCGGTGGTCGCGTTCATCGCAGCCAAGAAGCGGTCGGTGGCCTTCCAACACTTCCTCGATCGCCT
GATCTTGAAGGTGCCGGTCATCGGCCAGATCATGCACAACTCGGCGATTGCGCGTTTCTCGCGCACGCTCGGCGTCACCT
TCCGCGCGGGCGTCCCGCTTGTCGAGGCAATGGATACCGTGGCGGGCGCCACGGGCAACATCGTCTACGAACAAGCGGTG
CTGCGCATGCGTGACGACGTCGCCGTCGGCTATCCAGTCAATGTCGCGATGAAGCAGACGAATCTGTTTCCACACATGGT
CATCCAGATGACCGCGATCGGCGAAGAGGCTGGCGCGCTCGATACGATGCTGTTCAAGGTCGCGGAGTTCTATGAGCAGG
AGGTCAACAATGCGGTCGACGCGCTGTCGAGCCTGCTGGAACCGATGATCATGGTGTTCCTCGGCGTCGTGGTCGGTGGC
ATGGTGGTCGCGATGTACCTGCCGATCTTCAAGCTGGCCTCGGTCGTCGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.071 |
94.964 |
0.542 |
| pilC | Legionella pneumophila strain ERS1305867 |
56.533 |
95.444 |
0.54 |
| pilC | Acinetobacter baumannii D1279779 |
53.25 |
95.923 |
0.511 |
| pilC | Acinetobacter baylyi ADP1 |
53 |
95.923 |
0.508 |
| pilC | Vibrio cholerae strain A1552 |
41.5 |
95.923 |
0.398 |
| pilC | Vibrio campbellii strain DS40M4 |
41.25 |
95.923 |
0.396 |
| pilG | Neisseria gonorrhoeae MS11 |
42.746 |
92.566 |
0.396 |
| pilG | Neisseria meningitidis 44/76-A |
42.487 |
92.566 |
0.393 |
| pilC | Thermus thermophilus HB27 |
36.124 |
100 |
0.362 |