Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilG   Type   Machinery gene
Locus tag   DV160_RS04030 Genome accession   NZ_CP031336
Coordinates   655725..656957 (-) Length   410 a.a.
NCBI ID   WP_002220278.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 650725..661957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS03990 - 651258..651704 (+) 447 WP_002220271.1 DUF441 domain-containing protein -
  DV160_RS04010 pilF 652194..653870 (+) 1677 WP_002221967.1 type IV-A pilus assembly ATPase PilB Machinery gene
  DV160_RS04015 - 653955..654164 (-) 210 WP_002212333.1 DNA gyrase inhibitor YacG -
  DV160_RS04020 coaE 654157..654789 (-) 633 WP_002220275.1 dephospho-CoA kinase -
  DV160_RS04025 pilD 654791..655651 (-) 861 WP_002220276.1 prepilin peptidase Machinery gene
  DV160_RS04030 pilG 655725..656957 (-) 1233 WP_002220278.1 type 4 pilus assembly protein PilG Machinery gene
  DV160_RS04040 pgi 657467..659110 (+) 1644 WP_002220279.1 glucose-6-phosphate isomerase -
  DV160_RS04045 - 659080..659310 (+) 231 WP_002212338.1 hypothetical protein -
  DV160_RS04050 dapD 659320..660141 (+) 822 WP_079889349.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase -
  DV160_RS04055 fabI 660296..661081 (+) 786 WP_002228978.1 enoyl-ACP reductase FabI -

Sequence


Protein


Download         Length: 410 a.a.        Molecular weight: 45255.27 Da        Isoelectric Point: 9.9273

>NTDB_id=306066 DV160_RS04030 WP_002220278.1 655725..656957(-) (pilG) [Neisseria meningitidis strain M21717]
MAKNGGLSLFSKKEKRFIFEGRHSASDKLVNGEVSAFTEEEARKKLAKRGIRPLQITRVKTSSKRKITQEDITVFTRQLS
TMIKAGLPLMQAFEIVARGHGNPSMTEMLMEIRGEVEQGSSLSRAFSNHPKYFDRFYCNLVAAGETGGVLESLLDKLAIY
KEKTQAIRKKVKTALTYPVSVIAVAIGLVFVMMIFVLPAFKEVYANMGAELPALTQTVMDMSDFFVSYGWMVLIALGFAI
YGFLKLKARSIKIQRRMDAILLRMPIFGDIVRKGTIARWGRTTATLIAAGVPLVDVLDSTAGAAGNLIYEEATREIRTRV
IQGLSMTSGMRATELFPNMMLQMSSIGEESGSLDDMLNKAAEFYEDEVDNAVGRLSAMMEPIIIVILGLVIGTLLVAMYL
PLFNLGNVVA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=306066 DV160_RS04030 WP_002220278.1 655725..656957(-) (pilG) [Neisseria meningitidis strain M21717]
ATGGCTAAAAACGGAGGACTTTCTTTATTTTCAAAGAAAGAAAAACGCTTTATCTTTGAAGGCAGGCATTCCGCCTCCGA
CAAACTGGTCAACGGCGAAGTATCCGCGTTTACCGAAGAAGAGGCGCGCAAAAAACTGGCAAAACGCGGCATCCGCCCGT
TGCAGATTACCCGTGTGAAAACAAGCTCCAAGCGCAAAATCACACAAGAAGACATCACCGTTTTCACCCGCCAGCTGTCC
ACGATGATTAAAGCGGGCCTGCCGCTGATGCAGGCATTTGAAATCGTGGCGCGCGGACACGGCAACCCGTCTATGACGGA
AATGCTGATGGAAATCCGAGGCGAAGTGGAACAGGGCAGCTCGTTGAGCCGCGCATTCTCAAATCACCCGAAATATTTCG
ACCGCTTCTACTGCAACCTGGTTGCGGCGGGCGAAACGGGCGGCGTATTGGAAAGCCTGCTGGACAAATTGGCAATTTAC
AAAGAAAAAACCCAGGCCATCCGCAAAAAGGTAAAAACCGCGCTGACCTATCCGGTATCCGTCATCGCCGTCGCCATCGG
TTTGGTATTCGTGATGATGATTTTCGTACTGCCCGCCTTTAAAGAAGTTTACGCCAATATGGGCGCGGAGCTTCCCGCAC
TGACCCAAACAGTGATGGATATGTCCGACTTTTTCGTCTCATACGGCTGGATGGTGCTGATCGCACTGGGCTTTGCCATA
TACGGCTTCCTTAAATTGAAGGCGCGTTCGATTAAAATCCAACGGCGTATGGATGCCATACTGCTGCGTATGCCGATTTT
CGGAGACATTGTCCGCAAAGGGACGATTGCCCGCTGGGGCAGGACGACGGCGACGCTGATTGCGGCAGGCGTGCCTTTGG
TCGATGTATTGGACTCCACTGCCGGCGCGGCGGGCAATTTAATCTATGAAGAAGCCACCCGGGAAATCCGTACGCGCGTC
ATCCAAGGTTTGTCTATGACTTCGGGGATGCGTGCGACGGAACTGTTCCCCAATATGATGTTGCAGATGTCTTCCATCGG
CGAGGAATCGGGTTCTTTGGACGATATGCTCAACAAAGCCGCCGAATTTTACGAAGACGAGGTGGACAATGCGGTCGGCA
GGCTGTCCGCTATGATGGAGCCGATCATTATCGTGATTTTAGGCTTGGTCATCGGCACGCTTCTGGTCGCCATGTATCTG
CCGCTGTTTAATTTGGGCAACGTGGTCGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

98.78

100

0.988

  pilG Neisseria meningitidis 44/76-A

98.049

100

0.98

  pilC Acinetobacter baumannii D1279779

47.487

97.073

0.461

  pilC Acinetobacter baylyi ADP1

45.614

97.317

0.444

  pilC Pseudomonas stutzeri DSM 10701

44.888

97.805

0.439

  pilC Legionella pneumophila strain ERS1305867

44.836

96.829

0.434

  pilC Vibrio cholerae strain A1552

41.045

98.049

0.402

  pilC Vibrio campbellii strain DS40M4

39.303

98.049

0.385


Multiple sequence alignment