Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   STER_RS08995 Genome accession   NC_008532
Coordinates   1710761..1711861 (-) Length   366 a.a.
NCBI ID   WP_120764773.1    Uniprot ID   -
Organism   Streptococcus thermophilus LMD-9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705761..1716861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS11965 (STER_1832) - 1706086..1706361 (-) 276 WP_011681681.1 hypothetical protein -
  STER_RS08955 (STER_1833) - 1706373..1706570 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STER_RS08960 (STER_1834) - 1706819..1708012 (-) 1194 WP_011681683.1 acetate kinase -
  STER_RS08965 (STER_1835) comYH 1708068..1709024 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  STER_RS08970 (STER_1836) comGG 1709069..1709386 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  STER_RS08975 (STER_1837) comGF 1709364..1709801 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  STER_RS08980 (STER_1838) comGE 1709785..1710078 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  STER_RS08985 (STER_1839) comGD 1710050..1710478 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STER_RS08990 (STER_1840) comGC 1710438..1710764 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STER_RS08995 (STER_1841) comGB 1710761..1711861 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STER_RS09000 (STER_1842) comGA 1711743..1712684 (-) 942 WP_011681689.1 competence type IV pilus ATPase ComGA Machinery gene
  STER_RS09005 (STER_1843) - 1712765..1713127 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41876.03 Da        Isoelectric Point: 10.1377

>NTDB_id=305 STER_RS08995 WP_120764773.1 1710761..1711861(-) (comGB) [Streptococcus thermophilus LMD-9]
MPEKISKTIRRPTGISSWKVWLNKDVSLRGISKGKKLKISQQVKVIQLFKQLLKAGFTLTEIVAFLERSHLLKETSLSLM
KESLIRGDRLYQMLALVGFSDNIVTQISLADKHGNLLGSLTKIETYMLRMTKVRKKLMEVATYPILLLGFLILIMLGLKN
YLLPQLLEGDGKNNWAVQLVQIFPQLFFVSLCGLLVLGLILYLWVKRQSALVFYRRMAKIPFIGQTVRLYTTAYYAREWG
NLLGQGVDLLDLVALMQEQKSKLFRELGADLEEALMLGQSFPERIASHPFFTKELSLIIAYGEANARLGYELEVYAEEVW
QNFFNRLNKATTFVQPLIFVIVAVVIVMIYVAMLLPMYQNMEGMMS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=305 STER_RS08995 WP_120764773.1 1710761..1711861(-) (comGB) [Streptococcus thermophilus LMD-9]
TTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAGGTTTGGTTAAACAAGGATGTCTC
ACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAGTCAGCAAGTTAAGGTCATCCAGCTCTTCAAACAACTTTTAA
AGGCCGGTTTTACCTTAACTGAAATCGTAGCCTTTTTGGAGCGAAGTCACTTGCTGAAAGAAACATCCTTGTCTCTTATG
AAAGAGAGTTTAATACGCGGTGATAGGTTGTATCAGATGTTAGCGTTAGTGGGGTTTTCGGACAATATTGTTACTCAGAT
TTCTCTTGCTGACAAGCACGGTAATCTTCTAGGGAGTCTAACAAAGATTGAAACCTATATGCTTCGTATGACAAAGGTTC
GCAAGAAACTCATGGAGGTGGCGACTTATCCCATACTACTTCTGGGTTTTCTGATTCTGATTATGCTAGGACTTAAAAAT
TATCTTCTACCCCAACTCTTAGAGGGTGATGGTAAGAATAATTGGGCTGTACAGTTGGTTCAAATTTTTCCCCAGCTTTT
TTTTGTGAGTTTGTGTGGACTCCTTGTGTTGGGTTTAATTCTCTATCTATGGGTGAAACGACAGTCAGCCCTTGTTTTTT
ATAGGCGAATGGCCAAAATCCCTTTTATTGGTCAGACAGTAAGGCTTTACACGACCGCCTATTATGCTAGGGAATGGGGA
AATTTATTAGGTCAAGGCGTTGATTTGCTAGATTTGGTGGCTCTTATGCAAGAGCAAAAGTCTAAACTCTTCCGTGAGCT
GGGAGCCGATTTGGAAGAAGCCCTGATGCTGGGACAGAGTTTTCCTGAACGTATTGCCAGTCATCCGTTTTTTACTAAGG
AGCTCTCACTAATTATTGCTTATGGGGAGGCCAATGCGAGGTTGGGCTATGAGTTGGAAGTTTATGCCGAGGAGGTTTGG
CAAAACTTCTTTAACCGTCTTAATAAGGCAACAACCTTTGTGCAACCCCTCATTTTTGTTATTGTTGCAGTTGTGATTGT
AATGATCTATGTAGCCATGCTATTACCAATGTATCAAAATATGGAAGGAATGATGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(236-356)

Type II secretion system (T2SS), protein F (T2SSF)

(51-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

54.678

93.443

0.511
  comYB Streptococcus mutans UA159

54.678

93.443

0.511
  comYB Streptococcus gordonii str. Challis substr. CH1

51.17

93.443

0.478
  comGB/cglB Streptococcus mitis NCTC 12261

50.453

90.437

0.456
  comGB/cglB Streptococcus mitis SK321

49.697

90.164

0.448
  comGB/cglB Streptococcus pneumoniae Rx1

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae D39

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae R6

49.695

89.617

0.445
  comGB/cglB Streptococcus pneumoniae TIGR4

49.695

89.617

0.445
  comGB Lactococcus lactis subsp. cremoris KW2

45.758

90.164

0.413

Multiple sequence alignment