Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   STER_RS08980 Genome accession   NC_008532
Coordinates   1709785..1710078 (-) Length   97 a.a.
NCBI ID   WP_011226625.1    Uniprot ID   -
Organism   Streptococcus thermophilus LMD-9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704785..1715078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS08940 (STER_1830) - 1705187..1705630 (-) 444 WP_011681680.1 hypothetical protein -
  STER_RS11960 (STER_1831) - 1705704..1706042 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STER_RS11965 (STER_1832) - 1706086..1706361 (-) 276 WP_011681681.1 hypothetical protein -
  STER_RS08955 (STER_1833) - 1706373..1706570 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STER_RS08960 (STER_1834) - 1706819..1708012 (-) 1194 WP_011681683.1 acetate kinase -
  STER_RS08965 (STER_1835) comYH 1708068..1709024 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  STER_RS08970 (STER_1836) comGG 1709069..1709386 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  STER_RS08975 (STER_1837) comGF 1709364..1709801 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  STER_RS08980 (STER_1838) comGE 1709785..1710078 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE Machinery gene
  STER_RS08985 (STER_1839) comGD 1710050..1710478 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  STER_RS08990 (STER_1840) comGC 1710438..1710764 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STER_RS08995 (STER_1841) comGB 1710761..1711861 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STER_RS09000 (STER_1842) comGA 1711743..1712684 (-) 942 WP_011681689.1 competence type IV pilus ATPase ComGA Machinery gene
  STER_RS09005 (STER_1843) - 1712765..1713127 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10844.74 Da        Isoelectric Point: 10.4561

>NTDB_id=308 STER_RS08980 WP_011226625.1 1709785..1710078(-) (comGE) [Streptococcus thermophilus LMD-9]
MVNIKRRSLRGYILIESLVAMAVLVLVSSLILEQINTNRRLMADNLHQQEVLSVATMAVQTKQDQLTLNGIAVTVKRSQQ
GITVYESGKEIIHVSKQ

Nucleotide


Download         Length: 294 bp        

>NTDB_id=308 STER_RS08980 WP_011226625.1 1709785..1710078(-) (comGE) [Streptococcus thermophilus LMD-9]
GTGGTAAATATAAAAAGACGATCTCTTAGAGGTTATATTCTTATTGAAAGTCTGGTAGCTATGGCTGTTTTAGTACTTGT
CAGCAGTCTGATATTGGAACAAATTAATACCAACCGCAGACTAATGGCTGATAATCTCCATCAACAAGAGGTCTTGAGTG
TGGCAACAATGGCAGTTCAGACCAAGCAAGACCAGTTAACGCTGAATGGCATAGCGGTGACAGTTAAACGTAGCCAGCAA
GGTATCACGGTTTATGAATCGGGAAAGGAGATTATTCATGTATCTAAGCAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

43.299

100

0.433
  comYE Streptococcus mutans UA159

43.299

100

0.433
  comGE Lactococcus lactis subsp. cremoris KW2

36.082

100

0.361

Multiple sequence alignment