Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | STER_RS08965 | Genome accession | NC_008532 |
| Coordinates | 1708068..1709024 (-) | Length | 318 a.a. |
| NCBI ID | WP_011681684.1 | Uniprot ID | - |
| Organism | Streptococcus thermophilus LMD-9 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1703068..1714024
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| STER_RS08930 (STER_1828) | proC | 1703628..1704398 (+) | 771 | WP_011226616.1 | pyrroline-5-carboxylate reductase | - |
| STER_RS08935 (STER_1829) | - | 1704428..1705090 (-) | 663 | WP_011681679.1 | CPBP family intramembrane glutamic endopeptidase | - |
| STER_RS08940 (STER_1830) | - | 1705187..1705630 (-) | 444 | WP_011681680.1 | hypothetical protein | - |
| STER_RS11960 (STER_1831) | - | 1705704..1706042 (-) | 339 | WP_224103197.1 | CPBP family intramembrane glutamic endopeptidase | - |
| STER_RS11965 (STER_1832) | - | 1706086..1706361 (-) | 276 | WP_011681681.1 | hypothetical protein | - |
| STER_RS08955 (STER_1833) | - | 1706373..1706570 (-) | 198 | WP_011681682.1 | helix-turn-helix transcriptional regulator | - |
| STER_RS08960 (STER_1834) | - | 1706819..1708012 (-) | 1194 | WP_011681683.1 | acetate kinase | - |
| STER_RS08965 (STER_1835) | comYH | 1708068..1709024 (-) | 957 | WP_011681684.1 | class I SAM-dependent methyltransferase | Machinery gene |
| STER_RS08970 (STER_1836) | comGG | 1709069..1709386 (-) | 318 | WP_011681685.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| STER_RS08975 (STER_1837) | comGF | 1709364..1709801 (-) | 438 | WP_011681686.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| STER_RS08980 (STER_1838) | comGE | 1709785..1710078 (-) | 294 | WP_011226625.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| STER_RS08985 (STER_1839) | comGD | 1710050..1710478 (-) | 429 | WP_011226626.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| STER_RS08990 (STER_1840) | comGC | 1710438..1710764 (-) | 327 | WP_002946126.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| STER_RS08995 (STER_1841) | comGB | 1710761..1711861 (-) | 1101 | WP_120764773.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| STER_RS09000 (STER_1842) | comGA | 1711743..1712684 (-) | 942 | WP_011681689.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| STER_RS09005 (STER_1843) | - | 1712765..1713127 (-) | 363 | WP_011226630.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 318 a.a. Molecular weight: 35843.02 Da Isoelectric Point: 4.7891
>NTDB_id=26674 STER_RS08965 WP_011681684.1 1708068..1709024(-) (comYH) [Streptococcus thermophilus LMD-9]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF
Nucleotide
Download Length: 957 bp
>NTDB_id=26674 STER_RS08965 WP_011681684.1 1708068..1709024(-) (comYH) [Streptococcus thermophilus LMD-9]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
68.889 |
99.057 |
0.682 |
| comYH | Streptococcus mutans UA140 |
68.889 |
99.057 |
0.682 |