Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EPB55_RS13920 Genome accession   NZ_CP035731
Coordinates   2817443..2818069 (+) Length   208 a.a.
NCBI ID   WP_011078149.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2812443..2823069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS13910 - 2813700..2815487 (-) 1788 WP_154142512.1 ATP-binding protein -
  EPB55_RS13915 tig 2816039..2817337 (+) 1299 WP_011078150.1 trigger factor -
  EPB55_RS13920 clpP 2817443..2818069 (+) 627 WP_011078149.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EPB55_RS13925 clpX 2818140..2819420 (+) 1281 WP_011078148.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  EPB55_RS13930 lon 2819539..2821890 (+) 2352 WP_011078147.1 endopeptidase La -
  EPB55_RS13935 - 2822084..2822356 (+) 273 WP_013572181.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22952.31 Da        Isoelectric Point: 5.0212

>NTDB_id=304436 EPB55_RS13920 WP_011078149.1 2817443..2818069(+) (clpP) [Vibrio vulnificus strain 2142-77]
MSYQEKNAMSPIIDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP
GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK
TKLNKLLAEHTGQPLEVIERDTDRDNFMSADQAVEYGLVDAVLTHRSA

Nucleotide


Download         Length: 627 bp        

>NTDB_id=304436 EPB55_RS13920 WP_011078149.1 2817443..2818069(+) (clpP) [Vibrio vulnificus strain 2142-77]
ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATCATCGATGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGTGG
TGAACGTTCTTACGATATTTATTCGCGTTTGCTAAAAGAGCGAGTGATTTTCCTCACCGGACAGGTTGAAGACCACATGG
CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAGTCTGAGAACCCAGACAAAGATATCTTCCTTTACATTAACTCTCCA
GGTGGCAGCGTGACGGCAGGGATGTCGATTTACGACACAATGCAGTTCATCAAGCCAAATGTGAGCACAGTATGTATGGG
TCAAGCATGTTCAATGGGTGCATTTTTGCTTGCTGGTGGTGCACCAGGTAAGCGTTATGTACTACCTAACTCACGTGTGA
TGATTCACCAACCACTTGGTGGTTTCCAAGGTCAAGCGTCAGACATCCAAATTCATGCTCAGGAAATTCTTACTATTAAG
ACTAAACTGAACAAGTTGTTGGCAGAACACACTGGCCAACCATTGGAAGTGATTGAACGTGATACTGATCGCGATAATTT
TATGTCGGCAGATCAGGCAGTAGAATACGGTTTGGTGGACGCAGTATTGACTCATCGCAGTGCATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

70.526

91.346

0.644
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.894

90.385

0.587
  clpP Streptococcus pneumoniae R6

54.124

93.269

0.505
  clpP Streptococcus pneumoniae TIGR4

54.124

93.269

0.505
  clpP Streptococcus pneumoniae D39

54.124

93.269

0.505
  clpP Streptococcus pneumoniae Rx1

54.124

93.269

0.505
  clpP Lactococcus lactis subsp. cremoris KW2

52.062

93.269

0.486
  clpP Streptococcus thermophilus LMG 18311

52.604

92.308

0.486
  clpP Streptococcus thermophilus LMD-9

52.604

92.308

0.486
  clpP Streptococcus mutans UA159

51.813

92.788

0.481
  clpP Streptococcus pyogenes JRS4

52.105

91.346

0.476
  clpP Streptococcus pyogenes MGAS315

52.105

91.346

0.476
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.515

93.269

0.471

Multiple sequence alignment