Detailed information NTG0304437

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: EPB55_RS13925
• Genome accession: NZ_CP035731
• Coordinates: 2818140..2819420 (+)
• Length: 426 a.a.
• NCBI ID: WP_011078148.1
• Uniprot ID: Q7MMG6
• Organism: Vibrio vulnificus strain 2142-77
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2813140..2824420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB55_RS13910	-	2813700..2815487 (-)	1788	WP_154142512.1	ATP-binding protein	-
EPB55_RS13915	tig	2816039..2817337 (+)	1299	WP_011078150.1	trigger factor	-
EPB55_RS13920	clpP	2817443..2818069 (+)	627	WP_011078149.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
EPB55_RS13925	clpX	2818140..2819420 (+)	1281	WP_011078148.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
EPB55_RS13930	lon	2819539..2821890 (+)	2352	WP_011078147.1	endopeptidase La	-
EPB55_RS13935	-	2822084..2822356 (+)	273	WP_013572181.1	HU family DNA-binding protein	-
EPB55_RS13940	ppiD	2822533..2824392 (+)	1860	WP_072602844.1	peptidylprolyl isomerase	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46542.04 Da
• Isoelectric Point: 4.5889

>NTDB_id=304437 EPB55_RS13925 WP_011078148.1 2818140..2819420(+) (clpX) [Vibrio vulnificus strain 2142-77]
MTDKSKESGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLCNDIIREEIKDVLPKRESEALPTPREIRAHLDDYVI
GQDHAKKVLAVAVYNHYKRLRNGDTTSDGVELGKSNILLIGPTGSGKTLLAETLARFLDVPFTMADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRKAENPSITRDVSGEGVQQALLKLVEGTIASVPPQGGRKHPQQEFLQV
DTSKILFICGGAFAGLDKVIEQRVATGTGIGFGAEVRSKDESKTVGELFTQVEPEDLVKYGLIPEFIGRLPVTASLTELD
EEALIQILCQPKNALTKQYAALFELEGADLEFREDALKAIAKKAMERKTGARGLRSILEGVLLETMYELPSMDDVSKVVI
DESVINGESEPLLIYTNSDSQAAGAE

Nucleotide

• Length: 1281 bp

>NTDB_id=304437 EPB55_RS13925 WP_011078148.1 2818140..2819420(+) (clpX) [Vibrio vulnificus strain 2142-77]
ATGACAGACAAAAGCAAAGAGAGTGGTAGTGGTAAGTTGCTTTACTGCTCTTTCTGCGGCAAAAGCCAGCACGAAGTTCG
CAAGCTAATCGCTGGTCCATCCGTTTACATCTGTGACGAATGTGTCGATTTATGTAACGACATCATCCGTGAAGAGATCA
AAGATGTGCTTCCAAAACGCGAATCTGAAGCGTTGCCAACGCCTCGTGAGATCCGTGCACACCTTGATGACTATGTAATC
GGTCAAGACCATGCGAAAAAAGTGCTCGCGGTTGCGGTATATAACCACTACAAGCGTTTACGTAATGGTGACACAACGAG
TGATGGCGTGGAGCTAGGTAAGAGTAACATCTTGCTGATCGGCCCAACAGGTAGCGGTAAGACGTTGCTTGCTGAGACGC
TTGCGCGTTTCCTCGATGTACCGTTCACTATGGCAGATGCCACGACGCTAACAGAAGCGGGTTATGTGGGCGAAGATGTT
GAAAACATCATTCAAAAGTTGCTTCAGAAATGTGATTACGACGTAGCGAAAGCAGAGCGTGGTATTGTGTATATCGATGA
AATTGACAAGATTTCTCGTAAAGCAGAAAACCCATCTATTACTCGTGACGTTTCTGGTGAAGGCGTTCAGCAAGCGCTGC
TTAAACTGGTTGAAGGTACGATTGCTTCTGTACCACCTCAAGGTGGTCGTAAGCATCCTCAGCAAGAGTTTTTGCAAGTG
GATACGTCAAAGATCCTCTTTATCTGTGGTGGTGCATTTGCCGGTCTAGATAAAGTGATCGAACAACGCGTTGCAACAGG
TACAGGCATTGGTTTTGGTGCGGAAGTCCGCTCTAAAGACGAAAGCAAAACAGTGGGCGAATTGTTCACTCAGGTAGAGC
CAGAAGATCTTGTGAAATATGGTTTGATTCCTGAGTTTATTGGTCGTCTACCAGTGACCGCTTCGTTGACCGAGTTAGAC
GAAGAAGCATTAATTCAGATTCTTTGCCAACCAAAAAATGCGCTAACAAAGCAATATGCAGCGCTGTTTGAACTGGAAGG
TGCAGATCTTGAGTTCAGAGAAGATGCGCTAAAAGCGATCGCGAAAAAAGCGATGGAGCGTAAAACAGGCGCTCGTGGTT
TGCGTTCAATTTTGGAAGGCGTGTTGCTAGAAACCATGTATGAACTGCCATCGATGGACGACGTGAGCAAAGTTGTCATT
GATGAATCGGTGATTAATGGTGAATCAGAGCCGCTTTTGATTTACACCAACAGTGATAGCCAAGCCGCTGGCGCTGAGTA
A

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

3D structure

• AlphaFold DB: Q7MMG6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	59.102	94.131	0.556
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.062	95.07	0.523