Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DV369_RS03310 Genome accession   NZ_CP031239
Coordinates   660072..660419 (+) Length   115 a.a.
NCBI ID   WP_050948644.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 655072..665419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS03295 - 656818..658377 (+) 1560 WP_050948646.1 phosphoethanolamine transferase -
  DV369_RS03300 lspA 658447..658962 (+) 516 WP_050948645.1 signal peptidase II -
  DV369_RS03305 ispH 658959..659903 (+) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DV369_RS03310 comE1/comEA 660072..660419 (+) 348 WP_050948644.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV369_RS03315 thiB 660666..661664 (+) 999 WP_050948643.1 thiamine ABC transporter substrate binding subunit -
  DV369_RS03320 thiP 661669..663285 (+) 1617 WP_050948642.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DV369_RS03325 thiQ 663269..663916 (+) 648 WP_005669738.1 thiamine ABC transporter ATP-binding protein -
  DV369_RS03330 bioB 664029..665030 (+) 1002 WP_014550962.1 biotin synthase BioB -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12430.35 Da        Isoelectric Point: 9.0428

>NTDB_id=304437 DV369_RS03310 WP_050948644.1 660072..660419(+) (comE1/comEA) [Haemophilus influenzae strain M13034]
MKLMKTLFTSVVLCGSLAAGSTFAENKVVEQTTQAVVTTQTDSQVAPAMMGDKLNINIATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=304437 DV369_RS03310 WP_050948644.1 660072..660419(+) (comE1/comEA) [Haemophilus influenzae strain M13034]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGGTCACTTGCAGCTGGTTCCACTTTTGCTGAAAACAA
GGTGGTTGAGCAAACAACTCAAGCTGTTGTGACCACTCAAACGGATTCACAAGTAGCACCAGCTATGATGGGAGATAAAT
TGAATATTAACATAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

82.143

97.391

0.8
  comEA/comE1 Glaesserella parasuis strain SC1401

57.391

100

0.574
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment