Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DN407_RS18395 Genome accession   NZ_CP031068
Coordinates   3574565..3575803 (-) Length   412 a.a.
NCBI ID   WP_149216559.1    Uniprot ID   -
Organism   Bacillus sp. JAS24-2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3569565..3580803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN407_RS18375 (DN407_18405) spoVS 3570024..3570284 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  DN407_RS18380 (DN407_18410) - 3570434..3571228 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  DN407_RS18385 (DN407_18415) rny 3571391..3572953 (-) 1563 WP_000204911.1 ribonuclease Y -
  DN407_RS18390 (DN407_18420) recA 3573390..3574421 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  DN407_RS18395 (DN407_18425) cinA 3574565..3575803 (-) 1239 WP_149216559.1 competence/damage-inducible protein A Machinery gene
  DN407_RS18400 (DN407_18430) pgsA 3575824..3576402 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DN407_RS18405 (DN407_18435) - 3576467..3577378 (-) 912 WP_149216560.1 RodZ domain-containing protein -
  DN407_RS18410 (DN407_18440) - 3577400..3578185 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  DN407_RS18415 (DN407_18445) - 3578324..3578572 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  DN407_RS18420 (DN407_18450) - 3578648..3579361 (-) 714 WP_149216561.1 SDR family oxidoreductase -
  DN407_RS18425 (DN407_18455) - 3579462..3580748 (-) 1287 WP_149216562.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45475.79 Da        Isoelectric Point: 5.3499

>NTDB_id=303166 DN407_RS18395 WP_149216559.1 3574565..3575803(-) (cinA) [Bacillus sp. JAS24-2]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYVLLPGPPKEIKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTVKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=303166 DN407_RS18395 WP_149216559.1 3574565..3575803(-) (cinA) [Bacillus sp. JAS24-2]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCAACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCTGGTATGGGGGTAAATAAGAACGGAAAAGTTTATGTTTTATTACCAGGGCCGCCAAAAGAAATAAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAGCCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGTAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.01

100

0.58
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.481
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.778

100

0.476
  cinA Streptococcus pneumoniae R6

46.778

100

0.476
  cinA Streptococcus pneumoniae D39

46.539

100

0.473
  cinA Streptococcus mitis NCTC 12261

46.539

100

0.473
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367

Multiple sequence alignment