Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DN405_RS18530 Genome accession   NZ_CP031065
Coordinates   3606587..3607825 (-) Length   412 a.a.
NCBI ID   WP_006928395.1    Uniprot ID   -
Organism   Bacillus sp. SH8-8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3601587..3612825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN405_RS18510 (DN405_18490) spoVS 3602000..3602260 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  DN405_RS18515 (DN405_18495) - 3602410..3603204 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  DN405_RS18520 (DN405_18500) rny 3603367..3604929 (-) 1563 WP_000204911.1 ribonuclease Y -
  DN405_RS18525 (DN405_18505) recA 3605412..3606443 (-) 1032 WP_001283860.1 recombinase RecA Machinery gene
  DN405_RS18530 (DN405_18510) cinA 3606587..3607825 (-) 1239 WP_006928395.1 competence/damage-inducible protein CinA Machinery gene
  DN405_RS18535 (DN405_18515) pgsA 3607846..3608424 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DN405_RS18540 (DN405_18520) - 3608489..3609415 (-) 927 WP_006928386.1 helix-turn-helix domain-containing protein -
  DN405_RS18545 (DN405_18525) - 3609437..3610222 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  DN405_RS18550 (DN405_18530) - 3610361..3610609 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  DN405_RS18555 (DN405_18535) - 3610685..3611398 (-) 714 WP_149149890.1 SDR family oxidoreductase -
  DN405_RS18560 (DN405_18540) - 3611499..3612785 (-) 1287 WP_016123272.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45535.86 Da        Isoelectric Point: 5.2258

>NTDB_id=303116 DN405_RS18530 WP_006928395.1 3606587..3607825(-) (cinA) [Bacillus sp. SH8-8]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQYVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=303116 DN405_RS18530 WP_006928395.1 3606587..3607825(-) (cinA) [Bacillus sp. SH8-8]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGATTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTACTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAGATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCATTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAATATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTGTTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTACTAAAAGCGGATAT
CGGAATTAGTTTCACTGGTGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCTA
TTAAGGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment