Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DS737_RS13095 Genome accession   NZ_CP030880
Coordinates   2846354..2846779 (-) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2841354..2851779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS13065 - 2841436..2841705 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  DS737_RS13070 rapZ 2841702..2842553 (-) 852 WP_004637956.1 RNase adapter RapZ -
  DS737_RS13075 panC 2842582..2843427 (-) 846 WP_004637955.1 pantoate--beta-alanine ligase -
  DS737_RS13080 panB 2843431..2844240 (-) 810 WP_004637954.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  DS737_RS13085 folK 2844280..2844768 (-) 489 WP_004637953.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DS737_RS13090 pcnB 2844765..2846216 (-) 1452 WP_004637952.1 polynucleotide adenylyltransferase PcnB -
  DS737_RS13095 comEA 2846354..2846779 (-) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  DS737_RS13100 mazG 2846748..2847554 (-) 807 WP_004637950.1 nucleoside triphosphate pyrophosphohydrolase -
  DS737_RS13105 - 2847651..2848427 (+) 777 WP_113997720.1 SDR family oxidoreductase -
  DS737_RS13110 - 2848786..2849214 (+) 429 WP_005085309.1 hypothetical protein -
  DS737_RS13115 - 2849341..2851647 (-) 2307 WP_004637947.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=302028 DS737_RS13095 WP_005092347.1 2846354..2846779(-) (comEA) [Acinetobacter haemolyticus strain HW-2A]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=302028 DS737_RS13095 WP_005092347.1 2846354..2846779(-) (comEA) [Acinetobacter haemolyticus strain HW-2A]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAACAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAGGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426

Multiple sequence alignment