Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   DS737_RS13665 Genome accession   NZ_CP030880
Coordinates   2959656..2960540 (-) Length   294 a.a.
NCBI ID   WP_017394567.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain HW-2A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2954656..2965540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS737_RS13640 miaB 2955785..2957236 (+) 1452 WP_004637839.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  DS737_RS13645 - 2957276..2958355 (+) 1080 WP_017394568.1 PhoH family protein -
  DS737_RS13650 ybeY 2958374..2958859 (+) 486 WP_113997761.1 rRNA maturation RNase YbeY -
  DS737_RS13655 - 2958871..2959170 (+) 300 WP_113997762.1 antibiotic biosynthesis monooxygenase -
  DS737_RS13660 - 2959201..2959626 (-) 426 WP_162784530.1 hypothetical protein -
  DS737_RS13665 tonB2 2959656..2960540 (-) 885 WP_017394567.1 energy transducer TonB Machinery gene
  DS737_RS13670 - 2960776..2961459 (+) 684 WP_004637833.1 hypothetical protein -
  DS737_RS13675 - 2961654..2962370 (+) 717 WP_113997764.1 DUF3108 domain-containing protein -
  DS737_RS13680 - 2962515..2963090 (+) 576 WP_004637831.1 xanthine phosphoribosyltransferase -
  DS737_RS13685 - 2963136..2963909 (-) 774 WP_004637830.1 YwqG family protein -
  DS737_RS13690 thyA 2964081..2964923 (+) 843 WP_004637829.1 thymidylate synthase -
  DS737_RS13695 - 2964944..2965453 (+) 510 WP_004637828.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33535.02 Da        Isoelectric Point: 6.8580

>NTDB_id=302029 DS737_RS13665 WP_017394567.1 2959656..2960540(-) (tonB2) [Acinetobacter haemolyticus strain HW-2A]
MWNKINFRTQMTSFWWQDPIFVGAVVIAIMVHGLVLTTQFSMPSPTDTSTKEIAVSVRPSQDKVEHADFLAQTDQQGSGE
FHQAHRMSSDMPTPMQSDATTGEHELESLETIQQKRELLFEEKVLMTVLSWQKQAEQNERKKALEELQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDAAKQQRLAGEVRLMVILNAQGGIRAIRL
IESSGHPILDEAARASVRRGAPFGAFDSSMKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=302029 DS737_RS13665 WP_017394567.1 2959656..2960540(-) (tonB2) [Acinetobacter haemolyticus strain HW-2A]
ATGTGGAATAAAATAAATTTTCGTACTCAAATGACTTCCTTTTGGTGGCAAGATCCGATTTTTGTTGGAGCAGTTGTTAT
TGCAATCATGGTACATGGCCTCGTACTGACAACACAATTTTCGATGCCGTCACCTACTGATACATCAACCAAAGAAATCG
CCGTGTCTGTACGTCCAAGTCAAGATAAGGTCGAGCATGCAGATTTTTTAGCGCAAACTGATCAACAAGGATCAGGTGAA
TTTCATCAAGCACATCGTATGTCTAGTGATATGCCTACGCCAATGCAAAGTGATGCAACCACAGGAGAGCATGAGCTAGA
AAGTCTCGAAACCATACAACAGAAGCGTGAACTCCTCTTTGAGGAAAAAGTGTTAATGACAGTGTTAAGTTGGCAAAAGC
AAGCTGAACAGAATGAACGTAAGAAAGCATTAGAAGAATTACAAAGTCAATTTCAAGCCAAAGCTGCGATGGTGGCAAGT
TTAGAAGCGCAATATTTACAACGCCAACAAAATTTTAGCCGTAAGCAACGTATTAAAACGGTTGATGGGATACAAGCGAA
ACAAGATGCATCGGCAGCATATCTCGATAAATTCCGACAAAAAGTTGAGTTGTATGGCAATCGTTATTATCCCGATGCGG
CAAAACAGCAACGCTTAGCGGGTGAAGTACGTTTAATGGTGATTTTAAATGCGCAAGGCGGTATCCGAGCCATTCGTTTA
ATTGAGAGCTCAGGACATCCGATTTTGGATGAAGCAGCTCGTGCTTCTGTTCGCCGTGGTGCACCATTTGGAGCTTTTGA
CAGCAGTATGAAAGATATTTCTGAGTTACGCATTATCCGAACATGGCGTTTTGATCCAGTGGATGCTGAATTTGAAGTGC
ATTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.49

100

0.745

Multiple sequence alignment