Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   DNH82_RS10690 Genome accession   NZ_CP030374
Coordinates   2281285..2282328 (-) Length   347 a.a.
NCBI ID   WP_014613481.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain AH18     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 2276285..2287328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNH82_RS10660 (DNH82_10775) - 2276842..2277045 (-) 204 WP_014613487.1 DUF1128 family protein -
  DNH82_RS10665 (DNH82_10780) - 2277179..2277637 (+) 459 WP_014613486.1 low molecular weight protein-tyrosine-phosphatase -
  DNH82_RS10670 (DNH82_10785) - 2277645..2277932 (+) 288 WP_014613485.1 YtxH domain-containing protein -
  DNH82_RS10675 (DNH82_10790) - 2278148..2279485 (+) 1338 WP_015729387.1 YihY/virulence factor BrkB family protein -
  DNH82_RS10680 (DNH82_10795) - 2279518..2280099 (+) 582 WP_015729388.1 carbonic anhydrase -
  DNH82_RS10685 (DNH82_10800) vraR 2280666..2281295 (-) 630 WP_014613482.1 response regulator transcription factor Regulator
  DNH82_RS10690 (DNH82_10805) vraS 2281285..2282328 (-) 1044 WP_014613481.1 sensor histidine kinase Regulator
  DNH82_RS10695 (DNH82_10810) liaF 2282325..2283026 (-) 702 WP_014613480.1 cell wall-active antibiotics response protein LiaF -
  DNH82_RS10700 (DNH82_10815) - 2283039..2283428 (-) 390 WP_014613479.1 hypothetical protein -
  DNH82_RS10705 (DNH82_10820) map 2283526..2284287 (-) 762 WP_014613478.1 type I methionyl aminopeptidase -
  DNH82_RS10710 (DNH82_10825) - 2284384..2285382 (+) 999 WP_014613477.1 aromatic acid exporter family protein -
  DNH82_RS10715 (DNH82_10830) - 2286351..2287073 (-) 723 WP_014613476.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39939.24 Da        Isoelectric Point: 5.0435

>NTDB_id=301088 DNH82_RS10690 WP_014613481.1 2281285..2282328(-) (vraS) [Staphylococcus pseudintermedius strain AH18]
MNHYVRAIGSMLILVYSMLTAFFFIDKVFTNIIFFQGMFYTQILGIPVFIFLNLVVIFLCIIVGSVLAYKINQQNDWLKQ
QIVRAFEGETVGINDQQLELYNETIELYQALVPLNQELHKMRIKTQNLTNETYNLNDLKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKETDLAPPLDQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKSLVTDLQRKVPIKVVQEI
DEFEVPKGIEDHLFRITQEAISNTLRHAEGTQVTVELLNRNDYLLLRIQDDGIGFNVDEKLEQSYGLKNMRERAIEIGAT
FHIVSLPDAGTRIEVKAPLEKEEQHDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=301088 DNH82_RS10690 WP_014613481.1 2281285..2282328(-) (vraS) [Staphylococcus pseudintermedius strain AH18]
ATGAATCACTACGTCCGAGCGATAGGTTCGATGCTCATTCTCGTATATAGTATGCTCACCGCGTTTTTCTTTATTGACAA
AGTGTTCACCAATATTATTTTCTTTCAAGGCATGTTTTATACACAAATTTTAGGTATTCCTGTTTTTATCTTTTTAAATT
TAGTCGTCATTTTTTTATGTATTATTGTGGGCAGTGTGTTAGCTTATAAAATCAATCAACAAAATGATTGGCTCAAGCAA
CAAATCGTTCGTGCCTTTGAAGGTGAAACAGTGGGCATCAATGATCAACAACTCGAGCTGTATAATGAAACGATTGAATT
ATATCAAGCACTCGTCCCATTAAATCAAGAATTGCATAAAATGCGAATTAAAACACAAAATTTAACGAATGAAACGTATA
ATTTAAATGATTTGAAGGTGAAAAAGATTATAGAAGATGAACGACAGCGTTTAGCACGAGAATTGCATGATAGTGTGTCG
CAACAACTTTTCGCGGCAAGTATGATGTTGTCTGCAATCAAAGAAACAGATTTAGCACCACCGTTAGACCAACAAATTCC
AACGTTAGAAAAAATGGTGCAAGACTCACAACTTGAAATGCGCGCTCTGTTACTTCACTTGAGACCTATAGGATTGAAGG
ACAAATCGTTAGGTGAGGGAATTAAATCGCTTGTGACGGATCTACAACGTAAAGTACCCATTAAAGTCGTGCAAGAAATT
GATGAGTTTGAAGTACCTAAAGGCATTGAGGATCACCTTTTTAGAATTACCCAAGAAGCGATTTCCAATACGTTACGACA
TGCTGAGGGGACGCAAGTAACGGTAGAATTACTTAACCGCAATGATTATTTATTGTTGCGTATACAAGATGACGGCATTG
GATTTAATGTCGATGAAAAGTTAGAACAAAGTTATGGATTAAAAAATATGCGTGAACGTGCAATAGAGATTGGTGCCACA
TTTCATATCGTCTCATTACCTGATGCGGGGACGAGAATAGAAGTGAAAGCACCACTTGAAAAGGAGGAACAGCATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

83.862

100

0.839


Multiple sequence alignment