Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DNH82_RS11040 Genome accession   NZ_CP030374
Coordinates   2356116..2356832 (+) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain AH18     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351116..2361832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNH82_RS11015 (DNH82_11125) - 2352522..2353325 (+) 804 WP_014613416.1 carbon-nitrogen family hydrolase -
  DNH82_RS12960 (DNH82_11130) - 2353609..2353689 (-) 81 WP_110144734.1 delta-lysin family phenol-soluble modulin -
  DNH82_RS11025 (DNH82_11135) - 2354081..2354647 (+) 567 WP_014613414.1 accessory gene regulator AgrB -
  DNH82_RS11030 (DNH82_11140) agrD 2354649..2354786 (+) 138 WP_014613413.1 cyclic lactone autoinducer peptide AgrD -
  DNH82_RS11035 (DNH82_11145) agrC 2354810..2356102 (+) 1293 WP_015729415.1 quorum-sensing sensor histidine kinase AgrC -
  DNH82_RS11040 (DNH82_11150) agrA 2356116..2356832 (+) 717 WP_014613411.1 quorum-sensing response regulator AgrA Regulator
  DNH82_RS11045 (DNH82_11155) - 2356892..2357836 (-) 945 WP_014613410.1 carbohydrate kinase -
  DNH82_RS11050 (DNH82_11160) - 2357840..2359324 (-) 1485 WP_014613409.1 sucrose-6-phosphate hydrolase -
  DNH82_RS11055 (DNH82_11165) - 2359380..2360327 (-) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=301089 DNH82_RS11040 WP_014613411.1 2356116..2356832(+) (agrA) [Staphylococcus pseudintermedius strain AH18]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=301089 DNH82_RS11040 WP_014613411.1 2356116..2356832(+) (agrA) [Staphylococcus pseudintermedius strain AH18]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832

Multiple sequence alignment