Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DQF64_RS10435 Genome accession   NZ_CP030241
Coordinates   2033653..2034876 (+) Length   407 a.a.
NCBI ID   WP_078273700.1    Uniprot ID   A0A1T0A5T8
Organism   Moraxella bovis strain Epp63 (300)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2028653..2039876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQF64_RS10405 (DQF64_10400) - 2028826..2029065 (-) 240 Protein_2063 hypothetical protein -
  DQF64_RS10410 (DQF64_10405) - 2029207..2029689 (-) 483 WP_112742506.1 leucine-rich repeat domain-containing protein -
  DQF64_RS10415 (DQF64_10410) - 2029715..2030671 (-) 957 WP_078273696.1 NAD(P)/FAD-dependent oxidoreductase -
  DQF64_RS10420 (DQF64_10415) - 2030725..2031174 (-) 450 WP_078273697.1 hypothetical protein -
  DQF64_RS10425 (DQF64_10420) recG 2031213..2033306 (-) 2094 WP_078273698.1 ATP-dependent DNA helicase RecG -
  DQF64_RS10435 (DQF64_10430) pilC 2033653..2034876 (+) 1224 WP_078273700.1 type II secretion system F family protein Machinery gene
  DQF64_RS10440 (DQF64_10435) pilD 2034876..2035781 (+) 906 WP_112742507.1 prepilin peptidase Machinery gene
  DQF64_RS10450 (DQF64_10445) glnD 2036025..2038793 (+) 2769 WP_112742508.1 [protein-PII] uridylyltransferase -
  DQF64_RS10455 (DQF64_10450) - 2038851..2039699 (+) 849 WP_078273701.1 WG repeat-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44975.19 Da        Isoelectric Point: 9.4630

>NTDB_id=300332 DQF64_RS10435 WP_078273700.1 2033653..2034876(+) (pilC) [Moraxella bovis strain Epp63 (300)]
MAKVATEQLIDFKYSGTNRRGQNVKGELTAKSLELARAQLRKQGIVVQDVRQKSKPLFQIKKSIKAIDIAIFVRQLATMM
KAGVPLTQAFEIVADSLDNPSMKEIVLKVKADIEAGSNFATALRKHPKYFDDLFCSLVESGEQSGALETMLERVATYKEK
SEMLKAKIKKAMKYPIAVIIVAIIVTAILLVKVVPVFADMFAGFGAELPAFTQMVVNMSNWMVKYYLVFFIALAILVVSF
TQAKLRSQKFRNFLDRLALKLPIFGNIVYQAIIARFCRTLSTTFAAGVPLIDALDSTAGATNNIVFYEATQRVKEDVATG
QQMQFAMRNTNLFPSMVLQMVGIGEEAGSLEEMLDKAATFYENEVDNAVDGLTSLMEPMIMAFLGVVIGGLVIAMYLPIF
MMGDVIG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=300332 DQF64_RS10435 WP_078273700.1 2033653..2034876(+) (pilC) [Moraxella bovis strain Epp63 (300)]
ATGGCAAAAGTAGCAACTGAACAGTTAATTGATTTTAAATACTCTGGCACCAATAGACGTGGGCAGAACGTCAAAGGCGA
GCTAACCGCCAAAAGTCTTGAACTAGCTCGTGCTCAGCTTAGAAAGCAGGGCATTGTTGTCCAAGACGTTAGACAAAAAT
CCAAGCCCCTTTTTCAAATCAAAAAATCCATCAAAGCGATTGATATTGCTATTTTTGTGCGTCAGCTTGCCACGATGATG
AAAGCCGGTGTGCCACTGACCCAAGCCTTTGAGATTGTGGCTGATTCGCTTGACAATCCCAGCATGAAAGAGATTGTATT
AAAAGTTAAGGCTGACATCGAAGCGGGAAGTAACTTTGCCACTGCTCTGCGTAAGCACCCCAAATACTTTGATGACCTGT
TTTGTTCATTAGTCGAGTCTGGTGAGCAGTCAGGTGCGTTAGAGACCATGCTTGAACGTGTCGCTACCTATAAAGAAAAA
AGCGAAATGCTCAAAGCCAAAATTAAAAAAGCAATGAAATATCCGATTGCGGTTATCATTGTTGCTATTATTGTTACTGC
CATTCTATTGGTTAAGGTAGTTCCAGTCTTTGCTGATATGTTTGCTGGTTTTGGTGCTGAATTACCTGCCTTTACCCAGA
TGGTCGTTAATATGTCTAACTGGATGGTTAAATATTATTTGGTATTTTTTATTGCACTAGCAATCCTTGTTGTGTCTTTT
ACCCAAGCTAAGTTGCGTAGCCAAAAATTTAGAAATTTCTTAGATAGATTGGCTCTTAAACTACCCATATTTGGTAATAT
TGTTTATCAAGCCATCATCGCCCGTTTTTGTCGCACCCTCTCCACCACTTTTGCTGCTGGCGTACCTTTGATTGACGCCC
TAGATTCTACCGCAGGGGCAACCAATAATATTGTATTTTATGAAGCCACACAGCGTGTCAAAGAAGATGTCGCCACCGGT
CAGCAAATGCAGTTTGCCATGCGTAACACTAACCTATTTCCCAGCATGGTACTTCAAATGGTCGGCATTGGCGAAGAGGC
AGGTAGTTTGGAAGAAATGCTTGATAAGGCTGCCACTTTCTATGAGAATGAGGTGGACAATGCTGTTGATGGCTTAACCA
GTTTGATGGAACCCATGATTATGGCATTTTTAGGCGTGGTTATTGGTGGTTTAGTTATCGCCATGTATCTACCAATCTTC
ATGATGGGCGATGTTATCGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1T0A5T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

65.931

100

0.661
  pilC Acinetobacter baylyi ADP1

62.99

100

0.631
  pilC Pseudomonas stutzeri DSM 10701

61.772

97.052

0.6
  pilC Legionella pneumophila strain ERS1305867

55.89

98.034

0.548
  pilG Neisseria meningitidis 44/76-A

48.177

94.349

0.455
  pilG Neisseria gonorrhoeae MS11

48.177

94.349

0.455
  pilC Vibrio cholerae strain A1552

45.098

100

0.452
  pilC Vibrio campbellii strain DS40M4

42.611

99.754

0.425
  pilC Thermus thermophilus HB27

37.783

97.543

0.369

Multiple sequence alignment