Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DP112_RS10175 Genome accession   NZ_CP030125
Coordinates   2054300..2055667 (-) Length   455 a.a.
NCBI ID   WP_114866926.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2049300..2060667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS11445 - 2050258..2050470 (+) 213 WP_238711102.1 hypothetical protein -
  DP112_RS10160 (DP112_10165) - 2051150..2052370 (-) 1221 WP_114866925.1 glycosyltransferase family 8 protein -
  DP112_RS10165 (DP112_10170) - 2052717..2053475 (-) 759 WP_013730631.1 TIGR00266 family protein -
  DP112_RS10170 (DP112_10175) - 2053682..2054176 (-) 495 WP_014638738.1 carbonic anhydrase -
  DP112_RS10175 (DP112_10180) radA 2054300..2055667 (-) 1368 WP_114866926.1 DNA repair protein RadA Machinery gene
  DP112_RS10180 (DP112_10185) - 2055674..2056207 (-) 534 WP_114866927.1 histidine phosphatase family protein -
  DP112_RS10185 (DP112_10190) - 2056214..2056657 (-) 444 WP_002939955.1 dUTP diphosphatase -
  DP112_RS10190 (DP112_10195) - 2056676..2057671 (-) 996 WP_105121277.1 virulence RhuM family protein -
  DP112_RS10195 (DP112_10200) - 2057690..2058226 (-) 537 WP_114866928.1 hypothetical protein -
  DP112_RS11145 - 2058273..2058437 (+) 165 WP_164503939.1 hypothetical protein -
  DP112_RS10200 (DP112_10205) - 2058421..2058780 (-) 360 WP_024384177.1 YbaN family protein -
  DP112_RS10205 (DP112_10210) - 2058908..2059510 (+) 603 WP_114866929.1 NADPH-dependent FMN reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49901.41 Da        Isoelectric Point: 6.1911

>NTDB_id=299506 DP112_RS10175 WP_114866926.1 2054300..2055667(-) (radA) [Streptococcus suis strain HA1003]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGSGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=299506 DP112_RS10175 WP_114866926.1 2054300..2055667(-) (radA) [Streptococcus suis strain HA1003]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAATACCATTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTAAAGAACGAGCGAGTCAGCCTGACAGGGG
AGAAAACCCGTCCCATGAAGCTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACAAATATGGAGGAGTTCAAC
CGTGTCCTCGGTAGCGGTGTGGTGCCAGGCAGTCTGGTCCTGATCGGTGGCGATCCGGGGATTGGAAAATCCACCCTGCT
CTTACAGGTATCGACCCAGCTTTCGACCATTGGCACCGTCCTTTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTCTGGGCGACATCGACAGCGAGTTCTATCTCTATGCCGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTAACCAATGAACTTATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGCACCCTGGCTGGACCGCGGACCTTGGAGCATATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGACAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CCATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCCCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGACTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGTCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAATCAGCAGGCGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGATAAGCCGACCAACCCACAAGAGTGCTTTATAGGCGAAATTGGTCTGACAGGTGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCTAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCTCTGACCGGTATCAAGGTGCCCAAGGAAATCACCGTTATCGGCGTGACCACCATTGGCGAAGTCTTGCAGAAAGTAT
TCAACTGA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.15

99.341

0.905
  radA Streptococcus pneumoniae D39

90.929

99.341

0.903
  radA Streptococcus pneumoniae R6

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.929

99.341

0.903
  radA Streptococcus pneumoniae TIGR4

90.929

99.341

0.903
  radA Streptococcus mitis SK321

90.708

99.341

0.901
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment