Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DOL89_RS05195 Genome accession   NZ_CP030126
Coordinates   1102277..1103671 (-) Length   464 a.a.
NCBI ID   WP_119678182.1    Uniprot ID   -
Organism   Indioceanicola profundi strain SCSIO 08040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097277..1108671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOL89_RS05165 - 1097334..1097846 (+) 513 WP_119678176.1 GNAT family N-acetyltransferase -
  DOL89_RS05170 - 1097874..1098269 (-) 396 WP_162937341.1 DUF6491 family protein -
  DOL89_RS05175 - 1098417..1098806 (-) 390 WP_119678178.1 response regulator -
  DOL89_RS05180 - 1099209..1099928 (-) 720 WP_119678179.1 SDR family NAD(P)-dependent oxidoreductase -
  DOL89_RS05185 purF 1100091..1101542 (-) 1452 WP_119678180.1 amidophosphoribosyltransferase -
  DOL89_RS05190 - 1101585..1102274 (-) 690 WP_119678181.1 CvpA family protein -
  DOL89_RS05195 radA 1102277..1103671 (-) 1395 WP_119678182.1 DNA repair protein RadA Machinery gene
  DOL89_RS05200 - 1103849..1105372 (-) 1524 WP_162937342.1 hypothetical protein -
  DOL89_RS05205 - 1105512..1106165 (-) 654 WP_119678184.1 HAD hydrolase-like protein -
  DOL89_RS05210 gmk 1106268..1106936 (-) 669 WP_119680259.1 guanylate kinase -
  DOL89_RS05215 - 1106995..1107864 (-) 870 WP_119680260.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 49177.27 Da        Isoelectric Point: 7.3653

>NTDB_id=299511 DOL89_RS05195 WP_119678182.1 1102277..1103671(-) (radA) [Indioceanicola profundi strain SCSIO 08040]
MARSSTRYVCQSCGAAHPKWSGKCDACNEWNTLVEEQVESAPKGLGPSRSSGRRVEFVPLSGVSKDAPRRLSHIGEFDRV
CGGGLVNGSALLVGGDPGIGKSTLLLQALCRLSQHTRCAYVSGEEAVDQVRMRASRLGLANAPVELAAATSVRDIVASLD
VADGPQIAVIDSIQTMYVDTLDSAPGTVAQVRASASELIRVAKRRGITLLIVGHVTKDGQIAGPRVLEHMVDTVLYFEGE
RGHHFRILRAVKNRFGPTDEIGVFEMGEEGLVEVTNPSELFLADRRGDITGTAVFAGLEGTRPVLVEVQALVAPSPLGTP
RRAVVGWDASRLAMVMAVLEARCGLAIGANDVYLNVAGGLRVTEPAADLAVAAALVSSLTGEPVPHDAVVFGEIGLSGEI
RAVSQTDQRLKEAAKLGFSRVLMPARRGRSASRGDDGLKRIELDNLGDLLPLFQPTRQMAKGRG

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=299511 DOL89_RS05195 WP_119678182.1 1102277..1103671(-) (radA) [Indioceanicola profundi strain SCSIO 08040]
TTGGCCCGTTCGTCCACCCGCTATGTCTGCCAGTCCTGCGGCGCCGCGCATCCGAAGTGGAGCGGCAAGTGCGACGCATG
CAACGAGTGGAACACCCTCGTCGAGGAGCAGGTCGAGTCGGCGCCGAAGGGGCTTGGCCCCAGCCGAAGCTCCGGCCGCC
GTGTCGAGTTCGTTCCCCTGTCAGGTGTCAGCAAGGACGCGCCGCGCCGTCTTTCCCACATTGGGGAATTCGACCGTGTC
TGCGGCGGCGGTCTGGTCAATGGTTCCGCCCTGCTGGTCGGCGGCGATCCGGGCATCGGCAAATCCACGCTTCTTCTCCA
GGCGCTGTGCCGCCTGTCCCAGCATACCCGTTGCGCCTACGTCTCCGGCGAAGAGGCGGTGGACCAGGTGCGCATGCGCG
CCTCCCGCCTGGGCCTTGCCAATGCGCCCGTTGAGCTGGCGGCGGCCACTTCGGTGCGCGACATTGTAGCCTCGCTGGAC
GTGGCCGACGGCCCCCAGATCGCCGTCATCGACTCGATCCAGACCATGTATGTCGACACGCTGGATTCGGCCCCCGGCAC
CGTTGCCCAGGTCCGCGCCAGCGCGTCCGAGCTGATCCGGGTGGCGAAGCGCCGGGGCATCACCCTGCTGATCGTGGGCC
ACGTCACCAAGGACGGCCAGATCGCCGGCCCGCGCGTGCTGGAGCACATGGTCGATACCGTGCTCTATTTCGAAGGGGAG
CGCGGACACCATTTCCGCATCCTGCGCGCCGTCAAGAACCGCTTTGGTCCCACCGATGAGATCGGCGTGTTCGAGATGGG
CGAGGAAGGGCTGGTCGAAGTCACGAACCCGTCCGAGCTGTTCCTGGCCGACCGTCGCGGCGACATCACCGGAACGGCCG
TCTTCGCGGGGCTGGAAGGCACCCGTCCGGTTCTGGTCGAGGTGCAGGCACTGGTCGCCCCCTCTCCGCTAGGCACGCCG
CGCCGGGCCGTGGTCGGCTGGGACGCGTCCCGCCTCGCCATGGTCATGGCAGTGCTGGAGGCGCGTTGCGGGTTGGCAAT
CGGGGCCAATGACGTGTACCTGAATGTCGCCGGCGGCCTCCGGGTGACGGAGCCGGCGGCCGATCTGGCCGTGGCGGCCG
CCCTTGTCTCTTCCCTGACGGGGGAGCCTGTGCCCCATGATGCCGTTGTATTCGGGGAAATCGGGCTGTCGGGGGAGATC
CGGGCCGTGAGCCAGACGGACCAGCGCCTGAAAGAGGCCGCGAAGCTGGGCTTCAGCCGCGTGCTGATGCCGGCCCGGCG
GGGCCGTAGCGCTTCACGCGGCGACGACGGGCTGAAGCGGATCGAGCTGGATAATCTCGGAGACCTGCTGCCGCTGTTCC
AGCCGACACGCCAGATGGCGAAGGGCCGGGGGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(336-425)

KaiC (ATPase)

(73-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.913

94.397

0.481
  radA Streptococcus pneumoniae Rx1

48.706

91.595

0.446
  radA Streptococcus pneumoniae D39

48.706

91.595

0.446
  radA Streptococcus pneumoniae R6

48.706

91.595

0.446
  radA Streptococcus pneumoniae TIGR4

48.706

91.595

0.446
  radA Streptococcus mitis SK321

48.706

91.595

0.446
  radA Streptococcus mitis NCTC 12261

48.471

91.595

0.444

Multiple sequence alignment