Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   DP112_RS11040 Genome accession   NZ_CP030125
Coordinates   2228317..2229081 (+) Length   254 a.a.
NCBI ID   WP_029186209.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2223317..2234081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS11000 (DP112_11005) - 2223672..2224010 (+) 339 WP_114866995.1 DUF771 domain-containing protein -
  DP112_RS11005 (DP112_11010) - 2224073..2225194 (+) 1122 WP_114866996.1 site-specific integrase -
  DP112_RS11025 (DP112_11030) - 2225699..2226382 (-) 684 WP_053867304.1 YoaK family protein -
  DP112_RS11030 (DP112_11035) rlmH 2226407..2226886 (-) 480 WP_004194528.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  DP112_RS11035 (DP112_11040) htrA 2227060..2228256 (+) 1197 WP_114866997.1 trypsin-like peptidase domain-containing protein Regulator
  DP112_RS11040 (DP112_11045) spo0J 2228317..2229081 (+) 765 WP_029186209.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28996.28 Da        Isoelectric Point: 9.4760

>NTDB_id=299510 DP112_RS11040 WP_029186209.1 2228317..2229081(+) (spo0J) [Streptococcus suis strain HA1003]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTTTKILKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=299510 DP112_RS11040 WP_029186209.1 2228317..2229081(+) (spo0J) [Streptococcus suis strain HA1003]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAAGAA
CTGACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTGCAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACACATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAAGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAACTACAAAAATTCTCAAGAAGAAAAACGGGAGCGGAGAAATTCGAATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547

Multiple sequence alignment