Detailed information NTG0299059

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DPH57_RS14620
• Genome accession: NZ_CP030092
• Coordinates: 3461181..3462395 (+)
• Length: 404 a.a.
• NCBI ID: WP_112938405.1
• Uniprot ID: A0A7U6B682
• Organism: Massilia sp. YMA4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3456181..3467395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DPH57_RS14600 (DPH57_14600)	-	3456436..3456930 (-)	495	WP_112938401.1	NADH-quinone oxidoreductase subunit B family protein	-
DPH57_RS14605 (DPH57_14605)	-	3457003..3457860 (-)	858	WP_112938402.1	helix-turn-helix domain-containing protein	-
DPH57_RS14610 (DPH57_14610)	-	3458085..3459356 (+)	1272	WP_112938403.1	HlyC/CorC family transporter	-
DPH57_RS14615 (DPH57_14615)	pilF	3459482..3461170 (+)	1689	WP_227470197.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DPH57_RS14620 (DPH57_14620)	pilC	3461181..3462395 (+)	1215	WP_112938405.1	type II secretion system F family protein	Machinery gene
DPH57_RS14625 (DPH57_14625)	-	3462402..3463751 (-)	1350	WP_112938406.1	MFS transporter	-
DPH57_RS14630 (DPH57_14630)	-	3463800..3465638 (-)	1839	WP_112938407.1	alpha-amylase family glycosyl hydrolase	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43995.90 Da
• Isoelectric Point: 9.7386

>NTDB_id=299059 DPH57_RS14620 WP_112938405.1 3461181..3462395(+) (pilC) [Massilia sp. YMA4]
MARTGNQVKESVFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRAGRKVTDKDITLFTRQLATMMKA
GVPLLQAFDIVGKGHANPSVSKLIMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTL
AMKAKIKSALTYPVAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPAPTLFVMAMSEFFVSYWYIIFGGLFAAIYFFFQ
AWKRSLAMQQAMDRLLLRVPIFGDVIRKATVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVYLDATRKIQGEVSTGTS
LTVAMQNAEVFPNMVTQMVSIGEESGALDAMLGKVADFYEDEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYLPIFKL
GSVV

Nucleotide

• Length: 1215 bp

>NTDB_id=299059 DPH57_RS14620 WP_112938405.1 3461181..3462395(+) (pilC) [Massilia sp. YMA4]
ATGGCACGAACTGGAAACCAGGTGAAGGAGTCCGTCTTCGCATGGGAAGGCAAGGACAAGACCGGCAAGACGGTGCGCGG
CGAGCTGCGCGCCGGCGGCGAGGCCGTCGTCAACGTCACCCTGCGGCGCCAGGGCATCATGGTGACGAAGGTGAAGAAGA
AGGTGTACCGCGCCGGCCGCAAGGTGACGGACAAGGACATCACGCTGTTCACGCGCCAGCTGGCCACGATGATGAAGGCC
GGCGTGCCGCTGCTGCAGGCGTTCGACATCGTGGGCAAGGGCCACGCCAACCCGTCCGTGTCGAAGCTGATCATGGACCT
GCGCGCCGACATCGAGACCGGCACCAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTATTTCGACCCGCTGTTCTGCA
ACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAGGAAAAGACGCTG
GCCATGAAGGCCAAGATCAAGTCGGCGCTGACCTACCCGGTAGCGATCCTGGCGGTGGCGTTCATCGTGACGGCCGTCAT
CATGATCTGGGTGGTCCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCCGACCTGCCGGCGCCCACGCTGTTCGTGA
TGGCGATGTCGGAATTCTTCGTCAGCTACTGGTACATCATCTTCGGCGGCCTGTTCGCCGCCATCTACTTCTTCTTCCAG
GCCTGGAAACGCTCGCTGGCGATGCAGCAGGCGATGGACCGGCTGCTGCTGCGCGTGCCCATTTTCGGCGACGTGATCCG
CAAGGCCACCGTGGCGCGCTGGACCCGCACGCTGTCGACGATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCGACT
CGGTGGGCGGCGCGGCCGGCAACGCGGTCTACCTGGACGCCACCCGCAAGATACAGGGCGAGGTCTCGACCGGCACCAGC
CTGACGGTGGCGATGCAGAACGCCGAGGTGTTCCCCAACATGGTCACGCAGATGGTCTCGATCGGCGAGGAGTCCGGCGC
GCTCGACGCGATGCTGGGCAAGGTGGCCGACTTCTACGAGGACGAAGTGGACGAGGCGGTGGCCTCGCTGTCCTCGCTGA
TGGAGCCGGCCATCATGGTCATCCTGGGCGTCCTGATCGGCGGGCTGGTGGTGGCGATGTACCTGCCGATCTTCAAGCTG
GGTTCCGTGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (70-193)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

3D structure

• AlphaFold DB: A0A7U6B682

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56	99.01	0.554
pilC	Legionella pneumophila strain ERS1305867	55.303	98.02	0.542
pilG	Neisseria gonorrhoeae MS11	54.408	98.267	0.535
pilG	Neisseria meningitidis 44/76-A	54.156	98.267	0.532
pilC	Acinetobacter baylyi ADP1	53.015	98.515	0.522
pilC	Acinetobacter baumannii D1279779	51.889	98.267	0.51
pilC	Vibrio cholerae strain A1552	40.657	98.02	0.399
pilC	Vibrio campbellii strain DS40M4	40.302	98.267	0.396
pilC	Thermus thermophilus HB27	37.845	98.762	0.374