Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BCERKBAB4_RS17890 Genome accession   NC_010184
Coordinates   3608529..3609767 (-) Length   412 a.a.
NCBI ID   WP_012261535.1    Uniprot ID   A9VS24
Organism   Bacillus mycoides KBAB4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3603529..3614767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCERKBAB4_RS17870 (BcerKBAB4_3547) spoVS 3603921..3604181 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BCERKBAB4_RS17875 (BcerKBAB4_3548) - 3604331..3605125 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  BCERKBAB4_RS17880 (BcerKBAB4_3549) rny 3605305..3606870 (-) 1566 WP_002014600.1 ribonuclease Y -
  BCERKBAB4_RS17885 (BcerKBAB4_3550) recA 3607354..3608385 (-) 1032 WP_002014599.1 recombinase RecA Machinery gene
  BCERKBAB4_RS17890 (BcerKBAB4_3551) cinA 3608529..3609767 (-) 1239 WP_012261535.1 competence/damage-inducible protein A Machinery gene
  BCERKBAB4_RS17895 (BcerKBAB4_3552) pgsA 3609788..3610366 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BCERKBAB4_RS17900 (BcerKBAB4_3553) - 3610430..3611356 (-) 927 WP_002165210.1 helix-turn-helix domain-containing protein -
  BCERKBAB4_RS17905 (BcerKBAB4_3554) - 3611378..3612163 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BCERKBAB4_RS17910 (BcerKBAB4_3555) - 3612303..3612551 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  BCERKBAB4_RS17915 (BcerKBAB4_3556) ymfI 3612628..3613341 (-) 714 WP_002014593.1 elongation factor P 5-aminopentanone reductase -
  BCERKBAB4_RS17920 (BcerKBAB4_3557) yfmH 3613459..3614745 (-) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45565.96 Da        Isoelectric Point: 5.2192

>NTDB_id=29797 BCERKBAB4_RS17890 WP_012261535.1 3608529..3609767(-) (cinA) [Bacillus mycoides KBAB4]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASTLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKKLLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=29797 BCERKBAB4_RS17890 WP_012261535.1 3608529..3609767(-) (cinA) [Bacillus mycoides KBAB4]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTACTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAATGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGAAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGGCCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A9VS24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.709

100

0.597
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

45.585

100

0.464
  cinA Streptococcus pneumoniae R6

45.585

100

0.464
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.461
  cinA Streptococcus pneumoniae D39

45.346

100

0.461
  cinA Streptococcus mutans UA159

46.552

98.544

0.459
  cinA Streptococcus suis isolate S10

41.223

91.262

0.376

Multiple sequence alignment