Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DMC16_RS02955 Genome accession   NZ_CP029686
Coordinates   579764..581005 (-) Length   413 a.a.
NCBI ID   WP_003564173.1    Uniprot ID   A0A826HHN5
Organism   Lacticaseibacillus paracasei strain Lpc10     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 574764..586005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC16_RS02940 (DMC16_02940) - 576036..576686 (+) 651 WP_003657915.1 YigZ family protein -
  DMC16_RS02945 (DMC16_02945) rny 576780..578351 (-) 1572 WP_003657913.1 ribonuclease Y -
  DMC16_RS02950 (DMC16_02950) recA 578646..579707 (-) 1062 WP_003587498.1 recombinase RecA Machinery gene
  DMC16_RS02955 (DMC16_02955) cinA 579764..581005 (-) 1242 WP_003564173.1 competence/damage-inducible protein A Machinery gene
  DMC16_RS02960 (DMC16_02960) pgsA 581423..582016 (-) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DMC16_RS02965 (DMC16_02965) - 582013..582942 (-) 930 WP_003564169.1 helix-turn-helix domain-containing protein -
  DMC16_RS02970 (DMC16_02970) ymfI 583029..583757 (-) 729 WP_003564167.1 elongation factor P 5-aminopentanone reductase -
  DMC16_RS02975 (DMC16_02975) yfmH 583757..585049 (-) 1293 WP_003564165.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44271.52 Da        Isoelectric Point: 5.6023

>NTDB_id=295293 DMC16_RS02955 WP_003564173.1 579764..581005(-) (cinA) [Lacticaseibacillus paracasei strain Lpc10]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLEEAIELAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARAKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEVMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMV
GAIMDRDGQYFYGYGDDNSLAKELVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=295293 DMC16_RS02955 WP_003564173.1 579764..581005(-) (cinA) [Lacticaseibacillus paracasei strain Lpc10]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGTCCGCGACTTGAGGAGGCCATTG
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGCCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGTGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCCAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAGTTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGGTC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGCTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCCGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGGGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A826HHN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

51.887

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.53
  cinA Streptococcus mitis SK321

51.773

100

0.53
  cinA Streptococcus pneumoniae Rx1

51.185

100

0.523
  cinA Streptococcus pneumoniae R6

51.185

100

0.523
  cinA Streptococcus pneumoniae D39

50.948

100

0.521
  cinA Streptococcus mutans UA159

51.932

100

0.521
  cinA Bacillus subtilis subsp. subtilis str. 168

45.012

99.516

0.448
  cinA Streptococcus suis isolate S10

42.593

91.525

0.39

Multiple sequence alignment