Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | DACI_RS04405 | Genome accession | NC_010002 |
| Coordinates | 970388..970879 (-) | Length | 163 a.a. |
| NCBI ID | WP_012202796.1 | Uniprot ID | - |
| Organism | Delftia acidovorans SPH-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 965388..975879
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DACI_RS04390 (Daci_0860) | - | 965594..967219 (-) | 1626 | WP_012202792.1 | M48 family metalloprotease | - |
| DACI_RS04395 (Daci_0861) | moaC | 967372..967842 (+) | 471 | WP_012202793.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
| DACI_RS04400 (Daci_0862) | - | 967926..968222 (+) | 297 | WP_225971036.1 | hypothetical protein | - |
| DACI_RS30935 (Daci_0863) | - | 968239..970182 (+) | 1944 | WP_012202795.1 | tetratricopeptide repeat protein | - |
| DACI_RS04405 (Daci_0864) | pilA | 970388..970879 (-) | 492 | WP_012202796.1 | pilin | Machinery gene |
| DACI_RS04410 (Daci_0865) | - | 971104..971817 (-) | 714 | WP_012202797.1 | FHA domain-containing protein | - |
| DACI_RS04415 (Daci_0866) | - | 972061..972843 (-) | 783 | WP_043780614.1 | PP2C family serine/threonine-protein phosphatase | - |
| DACI_RS04420 (Daci_0867) | - | 973139..973831 (-) | 693 | WP_012202799.1 | TerC family protein | - |
| DACI_RS04425 (Daci_0868) | sucD | 973998..974891 (-) | 894 | WP_012202800.1 | succinate--CoA ligase subunit alpha | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 16468.71 Da Isoelectric Point: 8.9877
>NTDB_id=29487 DACI_RS04405 WP_012202796.1 970388..970879(-) (pilA) [Delftia acidovorans SPH-1]
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKVTEGLSLAAAAKVAVAENAANGKPYNAGWMPPNATNNVAG
VTIDQAAGYITITYQTGIAGAGTLILNPIDGPKTSGTAFSGGTSTSSNIPTSGSISWNCRAAGSTGVGTAGTIQAKYTPA
ECR
MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKVTEGLSLAAAAKVAVAENAANGKPYNAGWMPPNATNNVAG
VTIDQAAGYITITYQTGIAGAGTLILNPIDGPKTSGTAFSGGTSTSSNIPTSGSISWNCRAAGSTGVGTAGTIQAKYTPA
ECR
Nucleotide
Download Length: 492 bp
>NTDB_id=29487 DACI_RS04405 WP_012202796.1 970388..970879(-) (pilA) [Delftia acidovorans SPH-1]
ATGAAGCGTTCCATCCAGCAAGGTTTTACCTTGATCGAATTGATGATCGTTGTGGCGATCATCGGCATTTTGGCAGCCGT
TGCGCTGCCGGCTTATCAGGACTACACAACCCGCGCCAAGGTTACTGAAGGTCTTTCCCTTGCTGCCGCCGCCAAAGTGG
CCGTCGCTGAGAATGCGGCCAATGGCAAGCCCTATAACGCCGGTTGGATGCCTCCTAACGCGACCAATAACGTTGCTGGT
GTAACTATCGATCAAGCAGCAGGATACATCACGATCACTTATCAAACTGGCATCGCCGGCGCTGGCACGCTGATTCTCAA
CCCAATTGATGGCCCCAAGACTAGCGGCACTGCATTTTCCGGCGGAACCTCAACCTCCTCGAACATTCCGACCAGCGGTT
CCATCAGCTGGAATTGCCGCGCTGCTGGATCTACTGGCGTCGGCACAGCCGGCACCATCCAAGCCAAGTACACACCTGCT
GAATGCCGTTAA
ATGAAGCGTTCCATCCAGCAAGGTTTTACCTTGATCGAATTGATGATCGTTGTGGCGATCATCGGCATTTTGGCAGCCGT
TGCGCTGCCGGCTTATCAGGACTACACAACCCGCGCCAAGGTTACTGAAGGTCTTTCCCTTGCTGCCGCCGCCAAAGTGG
CCGTCGCTGAGAATGCGGCCAATGGCAAGCCCTATAACGCCGGTTGGATGCCTCCTAACGCGACCAATAACGTTGCTGGT
GTAACTATCGATCAAGCAGCAGGATACATCACGATCACTTATCAAACTGGCATCGCCGGCGCTGGCACGCTGATTCTCAA
CCCAATTGATGGCCCCAAGACTAGCGGCACTGCATTTTCCGGCGGAACCTCAACCTCCTCGAACATTCCGACCAGCGGTT
CCATCAGCTGGAATTGCCGCGCTGCTGGATCTACTGGCGTCGGCACAGCCGGCACCATCCAAGCCAAGTACACACCTGCT
GAATGCCGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
49.133 |
100 |
0.521 |
| pilA2 | Legionella pneumophila str. Paris |
47.853 |
100 |
0.479 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
47.853 |
100 |
0.479 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37 |
100 |
0.454 |
| comP | Acinetobacter baylyi ADP1 |
39.306 |
100 |
0.417 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.506 |
100 |
0.411 |
| pilE | Neisseria gonorrhoeae MS11 |
38.596 |
100 |
0.405 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
35.714 |
100 |
0.368 |