Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DK842_RS09970 Genome accession   NZ_CP029495
Coordinates   2116097..2117176 (-) Length   359 a.a.
NCBI ID   WP_114061337.1    Uniprot ID   -
Organism   Chromobacterium phragmitis strain IIBBL 112-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2111097..2122176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK842_RS09945 (DK842_09945) - 2111682..2112062 (+) 381 WP_114061332.1 diacylglycerol kinase -
  DK842_RS09950 (DK842_09950) - 2112147..2112515 (+) 369 WP_114061333.1 DUF1622 domain-containing protein -
  DK842_RS09955 (DK842_09955) - 2112517..2112894 (-) 378 WP_114061334.1 hypothetical protein -
  DK842_RS09960 (DK842_09960) topA 2113143..2115452 (-) 2310 WP_114061335.1 type I DNA topoisomerase -
  DK842_RS09965 (DK842_09965) - 2115609..2116067 (-) 459 WP_114061336.1 DUF494 family protein -
  DK842_RS09970 (DK842_09970) dprA 2116097..2117176 (-) 1080 WP_114061337.1 DNA-processing protein DprA Machinery gene
  DK842_RS09975 (DK842_09975) - 2117173..2118210 (-) 1038 WP_114061338.1 LysM peptidoglycan-binding domain-containing protein -
  DK842_RS09980 (DK842_09980) def 2118336..2118839 (+) 504 WP_114061339.1 peptide deformylase -
  DK842_RS09985 (DK842_09985) fmt 2118909..2119832 (+) 924 WP_114061340.1 methionyl-tRNA formyltransferase -
  DK842_RS09990 (DK842_09990) htpX 2119875..2120729 (+) 855 WP_114061341.1 zinc metalloprotease HtpX -
  DK842_RS09995 (DK842_09995) rsmB 2120797..2122047 (+) 1251 WP_114061342.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 36998.32 Da        Isoelectric Point: 6.0390

>NTDB_id=293299 DK842_RS09970 WP_114061337.1 2116097..2117176(-) (dprA) [Chromobacterium phragmitis strain IIBBL 112-1]
MSANLRAWLTLALTPGIGPVGFLKLIDAFGSAEHAAAARAAQTEKLIGREAAEALQDGAAAESADAALAWAEADGCHLLT
LLDDDYPPQLAESASPPPLLFARGRRELLARPMLAVVGSRAATPQGKRNAEDFASALAGHGYAVVSGLASGIDAAAHQGA
LPHPASTIAVIGTGIDRVYPASNRQLAHRIAAEGLILSEFPLGMGPLPGHFPRRNRVIAGLARGCLVVEAGTASGSLITA
RLAMENNRDVMAIPGSIHSAQARGCHRLIKDGARLVESVDDVLDEIGRLAAAPPAAGSREAPDAPPLLRGMGWEPVLAES
LAGTLGLTPGEVYAMLLELELSGQVASLPGGRFQRLAQL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=293299 DK842_RS09970 WP_114061337.1 2116097..2117176(-) (dprA) [Chromobacterium phragmitis strain IIBBL 112-1]
ATGAGCGCGAATCTGCGGGCCTGGCTGACGCTGGCGTTGACTCCCGGCATCGGACCGGTGGGTTTTCTCAAGCTGATAGA
CGCGTTCGGCTCCGCCGAGCACGCGGCGGCGGCCCGCGCCGCCCAGACTGAAAAGCTGATAGGCCGCGAAGCCGCCGAGG
CGCTGCAGGACGGCGCGGCCGCCGAGTCCGCCGACGCGGCGCTGGCCTGGGCCGAGGCAGACGGCTGCCACCTGCTCACC
CTGCTGGACGACGACTACCCGCCGCAACTGGCCGAATCCGCGTCGCCGCCGCCGCTGCTGTTCGCGCGCGGCCGCCGCGA
ACTGCTGGCGCGGCCGATGCTGGCCGTGGTCGGCAGCCGGGCGGCCACGCCGCAGGGCAAGCGCAATGCGGAAGATTTCG
CCTCCGCGCTGGCCGGCCACGGCTACGCCGTCGTCAGCGGGCTGGCCAGCGGCATCGACGCCGCCGCCCACCAGGGCGCG
CTGCCGCACCCCGCGTCCACCATCGCGGTGATCGGCACCGGCATCGACCGCGTCTACCCGGCGTCCAACCGCCAGCTGGC
GCACCGCATCGCGGCCGAAGGCCTGATCCTGTCCGAATTCCCGCTGGGCATGGGCCCGCTGCCCGGCCACTTCCCGCGCC
GCAACCGCGTGATCGCCGGCCTGGCGCGCGGCTGCCTGGTGGTGGAGGCTGGCACCGCGTCCGGCTCGCTGATCACCGCC
CGGCTGGCGATGGAGAACAACCGCGACGTGATGGCGATTCCCGGCAGCATCCACAGCGCCCAGGCCCGCGGCTGCCACCG
GCTGATCAAAGACGGCGCGCGGCTGGTGGAAAGCGTGGACGACGTGCTGGACGAGATCGGCCGCCTGGCGGCCGCGCCGC
CCGCTGCCGGCTCGCGGGAAGCCCCCGACGCGCCGCCGCTATTGCGCGGCATGGGCTGGGAACCGGTGCTCGCCGAGTCG
CTGGCCGGGACGCTCGGGTTGACTCCCGGGGAGGTTTACGCGATGCTGCTCGAACTTGAGCTATCCGGCCAGGTGGCCAG
CCTGCCGGGCGGCCGCTTCCAGCGGCTGGCACAACTCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(292-351)

DNA recombination-mediator protein A (DNA_processg_A)

(71-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis MC58

48.196

100

0.521
  dprA Neisseria meningitidis strain C311

48.196

100

0.521
  dprA Neisseria gonorrhoeae MS11

47.927

100

0.515
  dprA Neisseria gonorrhoeae strain FA1090

47.927

100

0.515
  dprA Vibrio campbellii strain DS40M4

42.077

100

0.429
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.22

100

0.407
  dprA Vibrio cholerae strain A1552

37.802

100

0.393
  dprA Acinetobacter baylyi ADP1

36.729

100

0.382
  dprA Legionella pneumophila strain ERS1305867

46.233

81.337

0.376

Multiple sequence alignment