Detailed information NTG0293202

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: DK182_RS00910
• Genome accession: NZ_CP029491
• Coordinates: 149256..149693 (+)
• Length: 145 a.a.
• NCBI ID: WP_002959513.1
• Uniprot ID: -
• Organism: Streptococcus sobrinus strain 10919
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144256..154693

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK182_RS00880 (DK181_00880)	-	145588..145956 (+)	369	WP_019781971.1	DUF1033 family protein	-
DK182_RS00885 (DK181_00885)	comGA/cglA	146382..147329 (+)	948	WP_019777327.1	competence type IV pilus ATPase ComGA	Machinery gene
DK182_RS00890 (DK181_00890)	comYB	147253..148296 (+)	1044	WP_275425199.1	competence type IV pilus assembly protein ComGB	Machinery gene
DK182_RS00895 (DK181_00895)	comYC	148293..148619 (+)	327	WP_019777325.1	competence type IV pilus major pilin ComGC	Machinery gene
DK182_RS00900 (DK181_00900)	comYD	148573..149007 (+)	435	WP_254051091.1	competence type IV pilus minor pilin ComGD	Machinery gene
DK182_RS00905 (DK181_00905)	comYE	148979..149272 (+)	294	WP_002959510.1	competence type IV pilus minor pilin ComGE	Machinery gene
DK182_RS00910 (DK181_00910)	comYF	149256..149693 (+)	438	WP_002959513.1	competence type IV pilus minor pilin ComGF	Machinery gene
DK182_RS00915 (DK181_00915)	comGG	149671..150132 (+)	462	WP_002959515.1	competence type IV pilus minor pilin ComGG	-
DK182_RS00925 (DK181_00925)	-	150334..150600 (+)	267	WP_002959516.1	type II toxin-antitoxin system RelE/ParE family toxin	-
DK182_RS00930 (DK181_00930)	-	150587..150862 (+)	276	WP_019777324.1	helix-turn-helix transcriptional regulator	-
DK182_RS00935 (DK181_00935)	comYH	150961..151914 (+)	954	WP_019773539.1	class I SAM-dependent methyltransferase	Machinery gene
DK182_RS00940 (DK181_00940)	-	151977..153173 (+)	1197	WP_109833408.1	acetate kinase	-
DK182_RS00945 (DK181_00945)	-	153651..154556 (+)	906	WP_109833723.1	LysR family transcriptional regulator	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16245.67 Da
• Isoelectric Point: 8.2388

>NTDB_id=293202 DK182_RS00910 WP_002959513.1 149256..149693(+) (comYF) [Streptococcus sobrinus strain 10919]
MWLKTRIRAFTLLECLVALLVIAGSVMVYQGLTQVLTSNVAYISKNDEEDWLLFCQQLRSELSGTDLDRVADNKLYVKKG
DQPLAFGQSRSDDFRKTNADGRGYQPMLFGLKACTISQTGQTVTISLTLKSGLERTFVYDFAKTS

Nucleotide

• Length: 438 bp

>NTDB_id=293202 DK182_RS00910 WP_002959513.1 149256..149693(+) (comYF) [Streptococcus sobrinus strain 10919]
ATGTGGCTAAAAACTAGAATTCGAGCCTTCACCCTCTTGGAGTGCTTGGTGGCCCTCTTGGTCATCGCTGGCAGTGTCAT
GGTCTATCAGGGGCTAACCCAGGTTTTGACCAGCAATGTTGCCTACATCAGCAAGAATGATGAGGAGGACTGGCTCCTCT
TTTGTCAGCAGCTTCGCTCAGAGCTATCTGGGACTGACTTGGACCGGGTGGCGGACAATAAACTTTATGTCAAAAAGGGT
GACCAGCCTCTAGCCTTTGGCCAGTCCCGCTCGGATGATTTTCGCAAGACCAATGCTGACGGCCGGGGCTATCAGCCCAT
GCTCTTTGGCCTCAAGGCCTGCACCATCAGCCAGACTGGTCAGACCGTCACTATTTCGCTGACTCTGAAATCAGGCTTAG
AAAGGACCTTTGTCTATGATTTTGCAAAAACGTCTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (43-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	64.029	95.862	0.614
comYF	Streptococcus mutans UA159	63.309	95.862	0.607
comGF	Lactococcus lactis subsp. cremoris KW2	51.049	98.621	0.503
comGF/cglF	Streptococcus mitis NCTC 12261	44.138	100	0.441
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.172	0.434
comGF/cglF	Streptococcus mitis SK321	42.069	100	0.421