Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | DK182_RS00935 | Genome accession | NZ_CP029491 |
| Coordinates | 150961..151914 (+) | Length | 317 a.a. |
| NCBI ID | WP_019773539.1 | Uniprot ID | - |
| Organism | Streptococcus sobrinus strain 10919 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 145961..156914
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK182_RS00885 (DK181_00885) | comGA/cglA | 146382..147329 (+) | 948 | WP_019777327.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DK182_RS00890 (DK181_00890) | comYB | 147253..148296 (+) | 1044 | WP_275425199.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DK182_RS00895 (DK181_00895) | comYC | 148293..148619 (+) | 327 | WP_019777325.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DK182_RS00900 (DK181_00900) | comYD | 148573..149007 (+) | 435 | WP_254051091.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DK182_RS00905 (DK181_00905) | comYE | 148979..149272 (+) | 294 | WP_002959510.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DK182_RS00910 (DK181_00910) | comYF | 149256..149693 (+) | 438 | WP_002959513.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DK182_RS00915 (DK181_00915) | comGG | 149671..150132 (+) | 462 | WP_002959515.1 | competence type IV pilus minor pilin ComGG | - |
| DK182_RS00925 (DK181_00925) | - | 150334..150600 (+) | 267 | WP_002959516.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| DK182_RS00930 (DK181_00930) | - | 150587..150862 (+) | 276 | WP_019777324.1 | helix-turn-helix transcriptional regulator | - |
| DK182_RS00935 (DK181_00935) | comYH | 150961..151914 (+) | 954 | WP_019773539.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DK182_RS00940 (DK181_00940) | - | 151977..153173 (+) | 1197 | WP_109833408.1 | acetate kinase | - |
| DK182_RS00945 (DK181_00945) | - | 153651..154556 (+) | 906 | WP_109833723.1 | LysR family transcriptional regulator | - |
| DK182_RS00950 (DK181_00950) | - | 154651..154917 (+) | 267 | WP_002959526.1 | ACT domain-containing protein | - |
| DK182_RS00955 (DK181_00955) | - | 154929..156266 (+) | 1338 | WP_002959528.1 | PFL family protein | - |
| DK182_RS00960 (DK181_00960) | - | 156506..156889 (-) | 384 | Protein_147 | hypothetical protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35550.30 Da Isoelectric Point: 4.1336
>NTDB_id=293203 DK182_RS00935 WP_019773539.1 150961..151914(+) (comYH) [Streptococcus sobrinus strain 10919]
MNFETIEKAYELLLENVQLLQNDLKTNSYDALIEQNAIYLDGKTENKTVLANDQALCDLNLSKEEWRRAYQFLFIKLAQS
EPLQANHQFTPDSIGFVLLFLLENLTKEESLDLLEIGSGTGNLAQTLLNNSSKGLNYLGLEVDDLLIDLSASIADVVGSD
ASFVQEDAVRPSLLKESDIIVSDLPVGYYPDDAIASRYQVAAQDDHTYAHHLLMEQSLKYLKANGFAIFLAPVNLLTSPQ
SDLLKAWLKGYADIVAVITLPEELFGNPANAKSIFVLQKQTVQAPETFVYPLSDLQDRDKLLDFMENFKKWSAEYIL
MNFETIEKAYELLLENVQLLQNDLKTNSYDALIEQNAIYLDGKTENKTVLANDQALCDLNLSKEEWRRAYQFLFIKLAQS
EPLQANHQFTPDSIGFVLLFLLENLTKEESLDLLEIGSGTGNLAQTLLNNSSKGLNYLGLEVDDLLIDLSASIADVVGSD
ASFVQEDAVRPSLLKESDIIVSDLPVGYYPDDAIASRYQVAAQDDHTYAHHLLMEQSLKYLKANGFAIFLAPVNLLTSPQ
SDLLKAWLKGYADIVAVITLPEELFGNPANAKSIFVLQKQTVQAPETFVYPLSDLQDRDKLLDFMENFKKWSAEYIL
Nucleotide
Download Length: 954 bp
>NTDB_id=293203 DK182_RS00935 WP_019773539.1 150961..151914(+) (comYH) [Streptococcus sobrinus strain 10919]
ATGAATTTTGAAACGATTGAAAAAGCTTATGAGCTGCTATTAGAGAATGTTCAGCTCTTGCAAAATGACTTGAAGACCAA
TAGTTACGATGCCTTGATTGAGCAAAATGCTATCTATCTGGATGGCAAAACTGAAAATAAGACGGTTTTGGCCAATGACC
AGGCCTTGTGTGACTTGAATTTGAGCAAGGAAGAGTGGCGGAGGGCCTACCAGTTTCTCTTTATTAAGCTGGCCCAGTCT
GAACCCTTGCAGGCCAACCACCAGTTTACGCCGGATAGTATTGGTTTTGTCCTGCTTTTCTTGCTGGAAAATCTGACCAA
GGAAGAAAGTCTGGACCTTCTGGAGATTGGCTCTGGAACGGGCAATCTAGCTCAAACCCTGCTCAATAACAGCAGTAAAG
GTCTGAATTATCTGGGGCTAGAAGTGGATGATTTGCTGATTGATTTGTCAGCCAGCATCGCTGATGTTGTGGGATCTGAC
GCTAGTTTCGTGCAGGAGGATGCGGTTCGTCCTTCCCTGCTCAAGGAGAGCGACATTATTGTCAGCGATCTTCCCGTTGG
CTATTATCCCGATGATGCTATTGCCAGTCGCTACCAGGTGGCTGCCCAGGATGACCACACCTATGCCCATCACCTGCTTA
TGGAGCAGTCGCTCAAGTACTTGAAGGCCAATGGTTTTGCCATTTTCTTGGCTCCAGTCAATCTTCTGACCAGTCCCCAG
AGTGATCTGCTCAAGGCTTGGCTCAAGGGTTATGCTGACATCGTGGCCGTCATTACCCTACCTGAGGAACTTTTTGGCAA
TCCGGCCAATGCCAAGTCTATCTTTGTCCTGCAGAAGCAGACTGTTCAGGCGCCCGAGACCTTCGTCTATCCGCTGAGTG
ATTTGCAAGACCGAGATAAGCTCTTGGATTTTATGGAAAATTTCAAGAAATGGTCAGCTGAATATATTCTTTGA
ATGAATTTTGAAACGATTGAAAAAGCTTATGAGCTGCTATTAGAGAATGTTCAGCTCTTGCAAAATGACTTGAAGACCAA
TAGTTACGATGCCTTGATTGAGCAAAATGCTATCTATCTGGATGGCAAAACTGAAAATAAGACGGTTTTGGCCAATGACC
AGGCCTTGTGTGACTTGAATTTGAGCAAGGAAGAGTGGCGGAGGGCCTACCAGTTTCTCTTTATTAAGCTGGCCCAGTCT
GAACCCTTGCAGGCCAACCACCAGTTTACGCCGGATAGTATTGGTTTTGTCCTGCTTTTCTTGCTGGAAAATCTGACCAA
GGAAGAAAGTCTGGACCTTCTGGAGATTGGCTCTGGAACGGGCAATCTAGCTCAAACCCTGCTCAATAACAGCAGTAAAG
GTCTGAATTATCTGGGGCTAGAAGTGGATGATTTGCTGATTGATTTGTCAGCCAGCATCGCTGATGTTGTGGGATCTGAC
GCTAGTTTCGTGCAGGAGGATGCGGTTCGTCCTTCCCTGCTCAAGGAGAGCGACATTATTGTCAGCGATCTTCCCGTTGG
CTATTATCCCGATGATGCTATTGCCAGTCGCTACCAGGTGGCTGCCCAGGATGACCACACCTATGCCCATCACCTGCTTA
TGGAGCAGTCGCTCAAGTACTTGAAGGCCAATGGTTTTGCCATTTTCTTGGCTCCAGTCAATCTTCTGACCAGTCCCCAG
AGTGATCTGCTCAAGGCTTGGCTCAAGGGTTATGCTGACATCGTGGCCGTCATTACCCTACCTGAGGAACTTTTTGGCAA
TCCGGCCAATGCCAAGTCTATCTTTGTCCTGCAGAAGCAGACTGTTCAGGCGCCCGAGACCTTCGTCTATCCGCTGAGTG
ATTTGCAAGACCGAGATAAGCTCTTGGATTTTATGGAAAATTTCAAGAAATGGTCAGCTGAATATATTCTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA159 |
64.984 |
100 |
0.65 |
| comYH | Streptococcus mutans UA140 |
64.669 |
100 |
0.647 |