Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SALB1_RS11480 Genome accession   NZ_CP029488
Coordinates   2551474..2552700 (-) Length   408 a.a.
NCBI ID   WP_109993998.1    Uniprot ID   A0A2Z3JG39
Organism   Salinisphaera sp. LB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2546474..2557700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALB1_RS11455 (SALB1_2350) - 2547583..2548554 (+) 972 WP_158590717.1 Nudix family hydrolase -
  SALB1_RS11460 - 2548614..2548829 (-) 216 WP_109993994.1 DNA gyrase inhibitor YacG -
  SALB1_RS11465 (SALB1_2352) zapD 2548995..2549765 (-) 771 WP_158590718.1 cell division protein ZapD -
  SALB1_RS11470 (SALB1_2353) coaE 2549863..2550504 (-) 642 WP_109993996.1 dephospho-CoA kinase -
  SALB1_RS11475 (SALB1_2354) - 2550599..2551474 (-) 876 WP_109993997.1 A24 family peptidase -
  SALB1_RS11480 (SALB1_2355) pilC 2551474..2552700 (-) 1227 WP_109993998.1 type II secretion system F family protein Machinery gene
  SALB1_RS11485 (SALB1_2356) pilR 2552731..2554110 (-) 1380 WP_109993999.1 sigma-54 dependent transcriptional regulator Regulator
  SALB1_RS11490 (SALB1_2357) - 2554107..2555708 (-) 1602 WP_109994000.1 PAS domain-containing sensor histidine kinase -
  SALB1_RS11495 (SALB1_2358) - 2555705..2555920 (-) 216 WP_109994001.1 hypothetical protein -
  SALB1_RS11500 (SALB1_2360) sucC 2556116..2557279 (+) 1164 WP_109994002.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44500.06 Da        Isoelectric Point: 10.1574

>NTDB_id=293126 SALB1_RS11480 WP_109993998.1 2551474..2552700(-) (pilC) [Salinisphaera sp. LB1]
MAETRTENHTFFWIGTDRNGTRVKGQTEGPNEAMVRATLRRQNINPLRVRKQTKLFGIGGKRKKKIKAGDIAILSRQLAT
MLGAGVPLVQSLDIVAKGASNPSLAELVNAIGEDIESGLPLAEALSRHPRYFDELFVNLVAAGERSGTLEDLLDKIATYK
EKTEAIKTKVRKALFYPTAVIIVAIIVMGILLYFVVPQFQSLFRGFGADLPAFTLMVIGLSETVQHWWWLILAVVFGAGY
GFVIARRRSRRFRRALDRVLLRAPVVGSIVDNAAVARFSRTLATMFAAGVPLVEALDSVARAAGNVAFEEAIHQMRGQVE
SGQRLELAMANTGRFPSMAHQMIKIGEEAGALDAMCGRVADFYESEVDAQVDGLSSLLEPMIMAVIGVLVGGLVIAMYLP
IFKLGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=293126 SALB1_RS11480 WP_109993998.1 2551474..2552700(-) (pilC) [Salinisphaera sp. LB1]
ATGGCAGAAACACGCACCGAAAACCATACGTTCTTCTGGATCGGCACCGACCGCAACGGCACCCGGGTCAAGGGCCAGAC
CGAGGGCCCGAACGAGGCCATGGTGCGCGCCACGCTGCGCCGCCAGAACATCAACCCGTTGCGCGTACGCAAGCAGACAA
AACTGTTCGGCATCGGCGGCAAGCGCAAGAAGAAGATCAAGGCCGGCGATATCGCGATTCTCTCGCGCCAGCTCGCCACC
ATGCTGGGCGCCGGGGTGCCGCTGGTGCAGTCGCTGGACATCGTGGCCAAGGGCGCCTCGAATCCGAGTCTGGCCGAGTT
GGTCAACGCCATCGGCGAGGACATCGAATCGGGGCTGCCGCTGGCCGAGGCGTTATCCCGTCATCCGCGTTATTTCGACG
AACTGTTCGTGAACCTGGTCGCGGCCGGCGAGCGCTCCGGCACGCTTGAGGATCTACTCGACAAGATCGCCACCTACAAG
GAAAAGACCGAGGCGATCAAGACCAAGGTACGCAAGGCCCTGTTCTATCCGACCGCGGTGATCATCGTGGCCATCATCGT
CATGGGCATTCTGCTGTATTTCGTGGTACCGCAGTTCCAGTCGCTGTTTCGCGGCTTCGGCGCGGATCTGCCGGCATTTA
CGCTGATGGTGATCGGATTGTCGGAAACCGTGCAGCATTGGTGGTGGCTGATTCTCGCCGTCGTGTTCGGCGCCGGCTAC
GGTTTCGTGATCGCGCGCCGACGATCGCGACGATTCCGGCGCGCACTCGATCGCGTGCTGCTGCGTGCGCCCGTGGTCGG
CTCGATCGTCGACAACGCCGCCGTCGCCCGCTTTTCCCGCACACTGGCCACGATGTTCGCGGCGGGCGTGCCACTGGTTG
AGGCACTGGATTCGGTCGCCCGTGCCGCGGGCAACGTGGCCTTCGAGGAAGCGATCCACCAGATGCGCGGGCAGGTGGAA
TCCGGCCAGCGCCTGGAGCTCGCCATGGCCAACACCGGCCGGTTCCCGAGCATGGCGCATCAAATGATCAAGATCGGCGA
AGAAGCCGGCGCCCTGGATGCCATGTGCGGCCGCGTGGCCGATTTCTACGAGTCGGAGGTGGATGCCCAGGTGGACGGCC
TGTCTTCCCTGCTCGAGCCGATGATCATGGCGGTCATCGGCGTGCTGGTGGGCGGGCTCGTGATTGCCATGTATCTGCCC
ATCTTCAAGCTCGGGTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3JG39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.724

100

0.569
  pilC Legionella pneumophila strain ERS1305867

54

98.039

0.529
  pilC Acinetobacter baylyi ADP1

51.589

100

0.517
  pilC Acinetobacter baumannii D1279779

51.128

97.794

0.5
  pilG Neisseria gonorrhoeae MS11

44.56

94.608

0.422
  pilG Neisseria meningitidis 44/76-A

44.56

94.608

0.422
  pilC Vibrio cholerae strain A1552

41.709

97.549

0.407
  pilC Vibrio campbellii strain DS40M4

40

99.265

0.397

Multiple sequence alignment