Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SALB1_RS11485 Genome accession   NZ_CP029488
Coordinates   2552731..2554110 (-) Length   459 a.a.
NCBI ID   WP_109993999.1    Uniprot ID   A0A2Z3J5J4
Organism   Salinisphaera sp. LB1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547731..2559110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALB1_RS11460 - 2548614..2548829 (-) 216 WP_109993994.1 DNA gyrase inhibitor YacG -
  SALB1_RS11465 (SALB1_2352) zapD 2548995..2549765 (-) 771 WP_158590718.1 cell division protein ZapD -
  SALB1_RS11470 (SALB1_2353) coaE 2549863..2550504 (-) 642 WP_109993996.1 dephospho-CoA kinase -
  SALB1_RS11475 (SALB1_2354) - 2550599..2551474 (-) 876 WP_109993997.1 A24 family peptidase -
  SALB1_RS11480 (SALB1_2355) pilC 2551474..2552700 (-) 1227 WP_109993998.1 type II secretion system F family protein Machinery gene
  SALB1_RS11485 (SALB1_2356) pilR 2552731..2554110 (-) 1380 WP_109993999.1 sigma-54 dependent transcriptional regulator Regulator
  SALB1_RS11490 (SALB1_2357) - 2554107..2555708 (-) 1602 WP_109994000.1 PAS domain-containing sensor histidine kinase -
  SALB1_RS11495 (SALB1_2358) - 2555705..2555920 (-) 216 WP_109994001.1 hypothetical protein -
  SALB1_RS11500 (SALB1_2360) sucC 2556116..2557279 (+) 1164 WP_109994002.1 ADP-forming succinate--CoA ligase subunit beta -
  SALB1_RS11505 (SALB1_2361) sucD 2557332..2558201 (+) 870 WP_109994003.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50316.78 Da        Isoelectric Point: 5.7771

>NTDB_id=293127 SALB1_RS11485 WP_109993999.1 2552731..2554110(-) (pilR) [Salinisphaera sp. LB1]
MNAAAQNAARALIVDDEADIRELLEITLGRMGIETVAVADLTTARRRFDDQHFDLCLTDMRLPDGEGIELVRHINDRAKS
CPVAVITAYGSAEAAVASLKAGAFDFVSKPIDVAGLRALVAQALKLAGLDHDAPPHPSLDVSPRLVGQTETMARLRETIA
KLARSQAPVYITGESGTGKELVARMIHAEGPRVNGAFVPVNCGAIPAALMESEFFGYLRGAFTGATRDTPGLFARADGGT
LFLDEIADLPLAMQVKLLRAIQERSIRPVGATMETAVDVRVVSASHRDLSIEVARGRFREDLYYRLNVIEVKVPPLRERT
DDIPALSDRILAGLARKMRLERTPRLTDEALAALLRYNFPGNIRELENILERAVTLAESPLIEREYLRLHSPLADAVASN
PADIVLDESVDLESQLEALERERIQSALEACRYNKTKAAQRLGITFRALRYRLAKLGME

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=293127 SALB1_RS11485 WP_109993999.1 2552731..2554110(-) (pilR) [Salinisphaera sp. LB1]
ATGAACGCCGCAGCCCAGAACGCCGCACGCGCTCTGATCGTCGACGACGAGGCCGACATCCGCGAGCTTCTGGAAATCAC
GCTCGGCCGGATGGGCATCGAAACCGTGGCGGTCGCCGATCTCACCACGGCCCGGCGCCGATTCGACGACCAACACTTCG
ATCTGTGTCTGACCGACATGCGCCTGCCCGACGGCGAAGGCATCGAACTGGTCCGACACATCAATGACCGGGCCAAGAGC
TGCCCGGTGGCCGTGATCACCGCCTACGGCAGCGCCGAGGCGGCCGTAGCCAGCCTCAAGGCGGGCGCCTTCGATTTCGT
CTCCAAGCCGATCGATGTCGCCGGGCTGCGGGCCCTGGTCGCCCAGGCGCTCAAGCTGGCCGGGCTCGATCACGACGCCC
CGCCCCACCCCTCGCTGGATGTCTCGCCCCGGCTGGTCGGTCAGACCGAGACGATGGCGCGCCTGCGCGAGACCATCGCC
AAGCTGGCGCGCAGCCAGGCGCCAGTCTATATCACGGGCGAATCCGGTACCGGCAAGGAACTGGTGGCGCGCATGATCCA
TGCCGAGGGTCCGCGCGTGAACGGTGCGTTCGTGCCGGTGAACTGCGGCGCGATTCCGGCGGCACTGATGGAATCGGAAT
TCTTCGGCTACCTGCGCGGCGCGTTCACGGGCGCGACACGCGACACACCGGGGCTGTTCGCGCGCGCGGACGGCGGCACG
CTGTTTCTCGACGAGATCGCCGATCTCCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGCTCGATCCG
GCCGGTGGGCGCAACCATGGAAACAGCGGTCGACGTTCGTGTCGTGAGTGCCAGCCATCGCGATCTGTCGATCGAAGTGG
CGCGGGGCCGTTTTCGCGAGGATCTTTACTACCGGCTGAATGTCATCGAGGTAAAGGTGCCGCCGCTACGCGAGCGTACG
GACGACATTCCAGCGCTTTCCGACCGTATCCTCGCCGGCCTGGCACGCAAGATGCGGCTCGAGCGCACGCCCCGGCTGAC
CGACGAGGCACTCGCTGCGCTGCTGCGCTACAACTTTCCCGGCAATATCCGGGAGCTGGAAAACATTCTGGAACGCGCCG
TGACCCTGGCCGAATCGCCACTGATCGAGCGCGAGTACCTGCGGCTGCACTCACCACTGGCCGATGCCGTGGCCTCGAAT
CCGGCCGACATAGTGCTCGACGAATCCGTCGATCTGGAAAGCCAGCTCGAGGCCCTGGAGCGCGAGCGCATTCAAAGCGC
GCTGGAGGCCTGCCGTTACAACAAGACCAAGGCCGCGCAGCGGCTGGGTATCACGTTCCGGGCACTGCGCTATCGCCTGG
CCAAACTGGGCATGGAATAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(416-456)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3J5J4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.98

98.257

0.58
  pilR Acinetobacter baumannii strain A118

46.055

100

0.471

Multiple sequence alignment