Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PLES_RS13780 Genome accession   NC_011770
Coordinates   2847839..2848333 (-) Length   164 a.a.
NCBI ID   WP_003821118.1    Uniprot ID   A0A939GVA8
Organism   Pseudomonas aeruginosa LESB58     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2842839..2853333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLES_RS13755 (PLES_26461) - 2842975..2844495 (-) 1521 WP_003821126.1 conjugal transfer protein TraG N-terminal domain-containing protein -
  PLES_RS13760 (PLES_26471) - 2844511..2844882 (-) 372 WP_003821125.1 hypothetical protein -
  PLES_RS13765 (PLES_26481) - 2844879..2846276 (-) 1398 WP_003821123.1 integrating conjugative element protein -
  PLES_RS13770 (PLES_26491) - 2846286..2847233 (-) 948 WP_012614067.1 TIGR03756 family integrating conjugative element protein -
  PLES_RS13775 (PLES_26501) - 2847230..2847676 (-) 447 WP_003821119.1 TIGR03757 family integrating conjugative element protein -
  PLES_RS13780 (PLES_26511) radC 2847839..2848333 (-) 495 WP_003821118.1 JAB domain-containing protein Machinery gene
  PLES_RS13785 (PLES_26521) - 2848516..2849301 (-) 786 WP_012614069.1 DsbA family protein -
  PLES_RS13790 (PLES_26531) - 2849315..2852200 (-) 2886 WP_012614070.1 conjugative transfer ATPase -
  PLES_RS13795 - 2852200..2852640 (-) 441 WP_003149753.1 TIGR03751 family conjugal transfer lipoprotein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18063.80 Da        Isoelectric Point: 6.7513

>NTDB_id=29310 PLES_RS13780 WP_003821118.1 2847839..2848333(-) (radC) [Pseudomonas aeruginosa LESB58]
MSLVANDSCVEPRFAPMSQSDDWIIRQAIALLEQRVFKKGPSLERPAAVKDYLRLKLAAEPNEVFAIVFLNSMHEVLAYE
PMFRGTIHSTSVHARPIVQRALELNAAAVIFSHQHPSGCTEPSSADRALTQTLRAALSLIDVRVLDHLIVGQGTPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=29310 PLES_RS13780 WP_003821118.1 2847839..2848333(-) (radC) [Pseudomonas aeruginosa LESB58]
ATGTCTCTCGTCGCCAACGACTCCTGCGTGGAGCCACGTTTTGCCCCCATGTCCCAATCCGATGACTGGATCATCCGGCA
AGCCATCGCGCTGCTGGAGCAGCGGGTCTTCAAGAAGGGGCCATCCCTGGAGAGGCCTGCCGCCGTCAAGGACTACCTGC
GCCTGAAACTGGCCGCCGAGCCCAATGAAGTCTTCGCCATCGTGTTCCTCAACAGCATGCACGAGGTGCTGGCCTACGAG
CCGATGTTCAGAGGCACGATCCATTCGACCTCGGTGCATGCGCGTCCGATCGTGCAGCGTGCCTTGGAACTGAATGCGGC
AGCGGTCATTTTTTCTCACCAACACCCTTCGGGCTGCACGGAGCCGTCGAGCGCGGACCGTGCGTTGACCCAAACGCTGA
GGGCCGCGTTGTCGCTGATCGACGTGAGGGTGCTGGATCACCTCATCGTCGGCCAGGGCACGCCGTACTCGTTCGCGGAA
TCCGGCCTGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A939GVA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.151

89.024

0.384

Multiple sequence alignment