Detailed information NTG0029310

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: BPUM_RS19225
• Genome accession: NC_009848
• Coordinates: 3166991..3167677 (-)
• Length: 228 a.a.
• NCBI ID: WP_012011430.1
• Uniprot ID: -
• Organism: Bacillus pumilus SAFR-032
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3161991..3172677

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BPUM_RS15835 (BPUM_3187)	fliW	3162124..3162558 (-)	435	WP_012011424.1	flagellar assembly protein FliW	-
BPUM_RS15840 (BPUM_3188)	-	3162587..3163165 (-)	579	WP_012011425.1	DUF6470 family protein	-
BPUM_RS15845 (BPUM_3189)	flgL	3163214..3164125 (-)	912	WP_012011426.1	flagellar hook-associated protein FlgL	-
BPUM_RS15850 (BPUM_3190)	flgK	3164135..3165655 (-)	1521	WP_012011427.1	flagellar hook-associated protein FlgK	-
BPUM_RS15855 (BPUM_3191)	-	3165671..3166153 (-)	483	WP_012011428.1	flagellar protein FlgN	-
BPUM_RS15860 (BPUM_3192)	flgM	3166172..3166435 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
BPUM_RS15865 (BPUM_3193)	-	3166515..3166934 (-)	420	WP_012011429.1	TIGR03826 family flagellar region protein	-
BPUM_RS19225	comFC	3166991..3167677 (-)	687	WP_012011430.1	amidophosphoribosyltransferase	Machinery gene
BPUM_RS15875 (BPUM_3195)	-	3167674..3167967 (-)	294	WP_012011431.1	late competence development ComFB family protein	-
BPUM_RS15880 (BPUM_3196)	comFA	3168034..3169413 (-)	1380	WP_012011432.1	DEAD/DEAH box helicase	Machinery gene
BPUM_RS15885 (BPUM_3197)	-	3169533..3170375 (-)	843	WP_012011433.1	DegV family protein	-
BPUM_RS15890 (BPUM_3198)	degU	3170593..3171282 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
BPUM_RS15895 (BPUM_3199)	degS	3171347..3172522 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26071.53 Da
• Isoelectric Point: 9.9190

>NTDB_id=29310 BPUM_RS19225 WP_012011430.1 3166991..3167677(-) (comFC) [Bacillus pumilus SAFR-032]
MICLICEGHVVTPFTWKSLLLLNDDRLCIACKHHLEKIKRPICPACGRAQSNDQLCQDCSWWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDAQAVFKRSFSMKEPVLIPIPLSKERQKERGFNQSVILASLIGQPILQPLMKIH
QSKQSKKKKNERLDQKGMFQIKQTDAIIQRDIILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=29310 BPUM_RS19225 WP_012011430.1 3166991..3167677(-) (comFC) [Bacillus pumilus SAFR-032]
TTGATCTGCCTGATTTGTGAGGGACATGTTGTCACTCCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATCACTTAGAAAAAATTAAACGTCCGATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCTGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTCCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGCCCAAGCAGTATTTAAGCGCTCCTTTTCAATGAAAGAACCTGTGCTCATCCCAATTCCTTTAAGTAAAGAAAGACAAA
AGGAAAGAGGGTTTAATCAGTCCGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTTCAGCCGCTTATGAAAATACAC
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGACAGATGCGAT
CATTCAAAGGGATATTATCTTGATTGACGACATTTATACAACGGGGGCTACTATTTATGATGCTGCGAGAATTTTAAAAG
AAGCGGGTGCCAAAAGTGTTTCCTCTTTTACGTTAATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (163-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus pneumoniae Rx1	40.611	100	0.408
comFC/cflB	Streptococcus pneumoniae D39	40.611	100	0.408
comFC/cflB	Streptococcus pneumoniae R6	40.611	100	0.408
comFC/cflB	Streptococcus pneumoniae TIGR4	40.611	100	0.408
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395