Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   BPUM_RS15890 Genome accession   NC_009848
Coordinates   3170593..3171282 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus SAFR-032     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3165593..3176282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS15855 (BPUM_3191) - 3165671..3166153 (-) 483 WP_012011428.1 flagellar protein FlgN -
  BPUM_RS15860 (BPUM_3192) flgM 3166172..3166435 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BPUM_RS15865 (BPUM_3193) - 3166515..3166934 (-) 420 WP_012011429.1 TIGR03826 family flagellar region protein -
  BPUM_RS19225 comFC 3166991..3167677 (-) 687 WP_012011430.1 amidophosphoribosyltransferase Machinery gene
  BPUM_RS15875 (BPUM_3195) - 3167674..3167967 (-) 294 WP_012011431.1 late competence development ComFB family protein -
  BPUM_RS15880 (BPUM_3196) comFA 3168034..3169413 (-) 1380 WP_012011432.1 DEAD/DEAH box helicase Machinery gene
  BPUM_RS15885 (BPUM_3197) - 3169533..3170375 (-) 843 WP_012011433.1 DegV family protein -
  BPUM_RS15890 (BPUM_3198) degU 3170593..3171282 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BPUM_RS15895 (BPUM_3199) degS 3171347..3172522 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BPUM_RS15900 (BPUM_3200) - 3172744..3173412 (+) 669 WP_012011434.1 YigZ family protein -
  BPUM_RS15905 (BPUM_3201) - 3173397..3174488 (+) 1092 WP_012011435.1 LCP family protein -
  BPUM_RS15910 (BPUM_3202) - 3174524..3175591 (-) 1068 WP_003212692.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=29304 BPUM_RS15890 WP_008348273.1 3170593..3171282(-) (degU) [Bacillus pumilus SAFR-032]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=29304 BPUM_RS15890 WP_008348273.1 3170593..3171282(-) (degU) [Bacillus pumilus SAFR-032]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCAGATGTTGTCA
TTATGGACATTAATATGCCGAATGTTAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGACGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTATCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAGACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment