Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BPUM_RS15880 Genome accession   NC_009848
Coordinates   3168034..3169413 (-) Length   459 a.a.
NCBI ID   WP_012011432.1    Uniprot ID   -
Organism   Bacillus pumilus SAFR-032     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3163034..3174413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS15845 (BPUM_3189) flgL 3163214..3164125 (-) 912 WP_012011426.1 flagellar hook-associated protein FlgL -
  BPUM_RS15850 (BPUM_3190) flgK 3164135..3165655 (-) 1521 WP_012011427.1 flagellar hook-associated protein FlgK -
  BPUM_RS15855 (BPUM_3191) - 3165671..3166153 (-) 483 WP_012011428.1 flagellar protein FlgN -
  BPUM_RS15860 (BPUM_3192) flgM 3166172..3166435 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  BPUM_RS15865 (BPUM_3193) - 3166515..3166934 (-) 420 WP_012011429.1 TIGR03826 family flagellar region protein -
  BPUM_RS19225 comFC 3166991..3167677 (-) 687 WP_012011430.1 amidophosphoribosyltransferase Machinery gene
  BPUM_RS15875 (BPUM_3195) - 3167674..3167967 (-) 294 WP_012011431.1 late competence development ComFB family protein -
  BPUM_RS15880 (BPUM_3196) comFA 3168034..3169413 (-) 1380 WP_012011432.1 DEAD/DEAH box helicase Machinery gene
  BPUM_RS15885 (BPUM_3197) - 3169533..3170375 (-) 843 WP_012011433.1 DegV family protein -
  BPUM_RS15890 (BPUM_3198) degU 3170593..3171282 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  BPUM_RS15895 (BPUM_3199) degS 3171347..3172522 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  BPUM_RS15900 (BPUM_3200) - 3172744..3173412 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52483.46 Da        Isoelectric Point: 10.1655

>NTDB_id=29303 BPUM_RS15880 WP_012011432.1 3168034..3169413(-) (comFA) [Bacillus pumilus SAFR-032]
MNMDKAMKLGEQLQSRHLLTAETRCLQSELDWLEEKGLVIRRTAIERKANGLICCRCGVSKNQYFAHSPCDKCQKDCVYC
RSCIMMGKTSECEFLYEWTGPPIEGTAHTELTWRGNLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMRVCIATPRTDVVLELEPRLKKAFHGLKIAALYGGSLQRFQIAPLVIATTHQLMRYKHAFDVLVIDEVDAFPYSMDE
RLHFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAIKIPLRFHQQLLPVPSFQWIGHWKKKLKKNQLPPIVMNWMQN
HIAKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKNHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=29303 BPUM_RS15880 WP_012011432.1 3168034..3169413(-) (comFA) [Bacillus pumilus SAFR-032]
TTGAACATGGACAAAGCAATGAAACTCGGGGAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTTACA
GTCTGAGTTAGATTGGCTGGAGGAGAAAGGGTTAGTTATCCGAAGGACTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GTTGCAGATGTGGTGTTTCAAAAAATCAATACTTTGCCCACTCTCCATGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACATCGGAATGTGAATTTCTATATGAATGGACGGGTCCACCCATAGAAGGAACCGC
TCACACGGAATTAACATGGCGGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCGAAGCGATAAAAC
ACAAATCTGATTTACTTATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAAGTTCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGGGTATGCATTGCGACACCTAGAACTGATGTGGTCCTTGAACTAGAGCCTCGGCTTAAAAAAGCATT
TCACGGACTGAAAATAGCTGCTCTTTATGGAGGAAGTCTTCAAAGGTTCCAAATAGCACCGCTAGTAATCGCTACAACTC
ATCAGTTGATGAGATATAAACATGCATTTGATGTGCTCGTTATAGATGAAGTTGATGCCTTTCCTTATTCAATGGATGAA
CGACTCCACTTTGCTGTTTTAAAGGCAATGAGAAAAAAAGGTGTTAGGGTTTATTTAAGTGCGACGCCATCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTTCGCTTTCACCAACAACTTTTACCTGTCCCAT
CCTTTCAATGGATTGGACACTGGAAGAAGAAATTAAAAAAGAACCAGCTTCCACCTATAGTAATGAATTGGATGCAGAAC
CATATTGCAAAGAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
ACACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTCCAGCAATTCAGAGATGACAAAT
ACGATGTATTAGTTACAACCACAATTCTTGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGGGTGCTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAATCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCAGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.967

99.129

0.525

Multiple sequence alignment