Detailed information NTG0292695

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: DKE43_RS18775
• Genome accession: NZ_CP029464
• Coordinates: 2346820..2347506 (-)
• Length: 228 a.a.
• NCBI ID: WP_189288297.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain ZB201701
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2341820..2352506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKE43_RS12275 (DKE43_12325)	fliW	2341953..2342387 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
DKE43_RS12280 (DKE43_12330)	-	2342416..2342994 (-)	579	WP_034660143.1	DUF6470 family protein	-
DKE43_RS12285 (DKE43_12335)	flgL	2343043..2343954 (-)	912	WP_066031682.1	flagellar hook-associated protein FlgL	-
DKE43_RS12290 (DKE43_12340)	flgK	2343964..2345484 (-)	1521	WP_060597394.1	flagellar hook-associated protein FlgK	-
DKE43_RS12295 (DKE43_12345)	-	2345500..2345982 (-)	483	WP_034660146.1	flagellar protein FlgN	-
DKE43_RS12300 (DKE43_12350)	flgM	2346001..2346264 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
DKE43_RS12305 (DKE43_12355)	-	2346344..2346763 (-)	420	WP_060597396.1	TIGR03826 family flagellar region protein	-
DKE43_RS18775	comFC	2346820..2347506 (-)	687	WP_189288297.1	ComF family protein	Machinery gene
DKE43_RS12315 (DKE43_12365)	-	2347503..2347796 (-)	294	WP_060597398.1	competence protein ComFB	-
DKE43_RS12320 (DKE43_12370)	comFA	2347863..2349242 (-)	1380	WP_276318041.1	DEAD/DEAH box helicase	Machinery gene
DKE43_RS12325 (DKE43_12375)	-	2349363..2350205 (-)	843	WP_034660152.1	DegV family protein	-
DKE43_RS12330 (DKE43_12380)	degU	2350423..2351112 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
DKE43_RS12335 (DKE43_12385)	degS	2351177..2352352 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.47 Da
• Isoelectric Point: 9.9327

>NTDB_id=292695 DKE43_RS18775 WP_189288297.1 2346820..2347506(-) (comFC) [Bacillus pumilus strain ZB201701]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=292695 DKE43_RS18775 WP_189288297.1 2346820..2347506(-) (comFC) [Bacillus pumilus strain ZB201701]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAATCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395