Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DKE43_RS12330 Genome accession   NZ_CP029464
Coordinates   2350423..2351112 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain ZB201701     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345423..2356112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS12295 (DKE43_12345) - 2345500..2345982 (-) 483 WP_034660146.1 flagellar protein FlgN -
  DKE43_RS12300 (DKE43_12350) flgM 2346001..2346264 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  DKE43_RS12305 (DKE43_12355) - 2346344..2346763 (-) 420 WP_060597396.1 TIGR03826 family flagellar region protein -
  DKE43_RS18775 comFC 2346820..2347506 (-) 687 WP_189288297.1 ComF family protein Machinery gene
  DKE43_RS12315 (DKE43_12365) - 2347503..2347796 (-) 294 WP_060597398.1 competence protein ComFB -
  DKE43_RS12320 (DKE43_12370) comFA 2347863..2349242 (-) 1380 WP_276318041.1 DEAD/DEAH box helicase Machinery gene
  DKE43_RS12325 (DKE43_12375) - 2349363..2350205 (-) 843 WP_034660152.1 DegV family protein -
  DKE43_RS12330 (DKE43_12380) degU 2350423..2351112 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  DKE43_RS12335 (DKE43_12385) degS 2351177..2352352 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  DKE43_RS12340 (DKE43_12390) - 2352574..2353242 (+) 669 WP_012011434.1 YigZ family protein -
  DKE43_RS12345 (DKE43_12395) - 2353227..2354318 (+) 1092 WP_060597401.1 LCP family protein -
  DKE43_RS12350 (DKE43_12400) - 2354354..2355421 (-) 1068 WP_034660156.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=292681 DKE43_RS12330 WP_008348273.1 2350423..2351112(-) (degU) [Bacillus pumilus strain ZB201701]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=292681 DKE43_RS12330 WP_008348273.1 2350423..2351112(-) (degU) [Bacillus pumilus strain ZB201701]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGGGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment