Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DKE43_RS04455 Genome accession   NZ_CP029464
Coordinates   865672..866922 (+) Length   416 a.a.
NCBI ID   WP_060596326.1    Uniprot ID   -
Organism   Bacillus pumilus strain ZB201701     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 860672..871922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKE43_RS04430 (DKE43_04445) - 862081..862809 (+) 729 WP_106071510.1 SDR family oxidoreductase -
  DKE43_RS04435 (DKE43_04450) - 862883..863140 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  DKE43_RS04440 (DKE43_04455) - 863272..864063 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  DKE43_RS04445 (DKE43_04460) - 864087..864998 (+) 912 WP_106071509.1 helix-turn-helix domain-containing protein -
  DKE43_RS04450 (DKE43_04465) pgsA 865074..865655 (+) 582 WP_066030887.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DKE43_RS04455 (DKE43_04470) cinA 865672..866922 (+) 1251 WP_060596326.1 competence/damage-inducible protein A Machinery gene
  DKE43_RS04460 (DKE43_04475) recA 867099..868139 (+) 1041 WP_034662211.1 recombinase RecA Machinery gene
  DKE43_RS04465 (DKE43_04480) rny 868640..870202 (+) 1563 WP_003211958.1 ribonuclease Y -
  DKE43_RS04470 (DKE43_04485) - 870291..871085 (+) 795 WP_034662209.1 TIGR00282 family metallophosphoesterase -
  DKE43_RS04475 (DKE43_04490) spoVS 871287..871547 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45585.67 Da        Isoelectric Point: 4.9867

>NTDB_id=292657 DKE43_RS04455 WP_060596326.1 865672..866922(+) (cinA) [Bacillus pumilus strain ZB201701]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLAGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=292657 DKE43_RS04455 WP_060596326.1 865672..866922(+) (cinA) [Bacillus pumilus strain ZB201701]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGGTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTTATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGATTTA
ACAAAAGAAACCATTGCGAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGACTACTT
TCGAAAGACTGGACGAGACATGTCGCCGAATAACCGTAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTAAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACATTTTATATGTTGCTTCCTGGACCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAGCCGCTGATTTCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCGCGGGTAGGTGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACTGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTGTCGTTTGTTATACAAATCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACGTTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTCTAGAGCTTGCTGAAGGTGCTAGAAAGCT
CGCGGGAAGTGATATTGGCATTAGTTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGAAAAGTGT
TCATTGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment