Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DI243_RS09865 Genome accession   NZ_CP029370
Coordinates   2154682..2155950 (+) Length   422 a.a.
NCBI ID   WP_025679772.1    Uniprot ID   A0A3G8R3Z0
Organism   Paenibacillus polymyxa strain CJX518     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2149682..2160950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI243_RS09835 (DI243_09910) - 2150507..2150761 (+) 255 WP_013370745.1 DUF3243 domain-containing protein -
  DI243_RS09840 (DI243_09915) - 2150990..2151763 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  DI243_RS09845 (DI243_09920) - 2151794..2152906 (+) 1113 WP_040101543.1 helix-turn-helix domain-containing protein -
  DI243_RS09850 - 2152991..2153155 (+) 165 WP_013370749.1 hypothetical protein -
  DI243_RS09855 (DI243_09925) - 2153301..2153792 (+) 492 WP_040101542.1 YajQ family cyclic di-GMP-binding protein -
  DI243_RS09860 (DI243_09930) pgsA 2154001..2154588 (+) 588 WP_040101541.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DI243_RS09865 (DI243_09935) cinA 2154682..2155950 (+) 1269 WP_025679772.1 competence/damage-inducible protein A Machinery gene
  DI243_RS09870 (DI243_09940) recA 2156178..2157239 (+) 1062 WP_040101540.1 recombinase RecA Machinery gene
  DI243_RS09875 (DI243_09945) - 2157451..2158200 (+) 750 WP_025679774.1 regulatory protein RecX -
  DI243_RS09880 (DI243_09950) rny 2158562..2160106 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46412.43 Da        Isoelectric Point: 4.7168

>NTDB_id=292045 DI243_RS09865 WP_025679772.1 2154682..2155950(+) (cinA) [Paenibacillus polymyxa strain CJX518]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNMDRLQEAVRLAQKRADIILFSGGLGPTQDDLTKDA
IAAVLGRKLQIDRLAMDKLDQFFRNRGLEMTENNRRQALSIEGATPLENETGLAIGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETRLLDLIESQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVQIQQRLSEYMYASEDVTLEKVIVDLMAKRGLTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVYELNLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=292045 DI243_RS09865 WP_025679772.1 2154682..2155950(+) (cinA) [Paenibacillus polymyxa strain CJX518]
ATGAAAGCTGAAATCATTGCAGTAGGAACAGAGTTATTACTTGGACAAATAGTAAATACAAATGCCCAATATTTGTCACA
AGAGCTAGCTACTATCGGAATTGATGTATATTTTCAGACTGTAGTTGGCGATAACATGGATCGCCTTCAGGAAGCGGTAC
GTCTTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCTGGTGGGCTGGGGCCAACTCAGGACGATTTGACAAAAGATGCG
ATAGCGGCTGTACTGGGGCGAAAATTGCAGATAGATCGTCTTGCCATGGACAAGCTGGATCAGTTTTTCCGTAACCGCGG
GCTAGAAATGACCGAGAATAACCGCCGCCAGGCGCTTTCTATTGAAGGAGCCACTCCGCTTGAAAATGAGACGGGTTTAG
CTATAGGGGATGCCATTGCACAGGACGGTAAATTTTATGTGGTTTTGCCCGGACCACCTAAGGAACTTAAACCTATGTTT
GCAAATCATGCTAAACCATGGTTGCTTCAGCAGGCATTAAGCGGTGAGGAGATGCCGATTTATTCGAAAATGCTAAAATT
CGCAGGGATCGGTGAGTCAGCTCTTGAAACGCGCTTGTTAGATCTGATCGAATCCCAGACGGACCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGTGAGAGTGAAGCTTTAATTAAGCTGACGGCT
ACGGAAGTACAAATTCAGCAGCGTCTTTCCGAATATATGTATGCAAGTGAGGATGTTACGCTGGAGAAGGTGATTGTAGA
TTTAATGGCCAAGCGCGGACTCACTGTGAGCGCAGCGGAAAGCTGTACAGGCGGTATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGTTATTCCAATGAAATGAAGATGAAATTGCTCAATGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCAAGAAT
GATTATGGACAGCGATTTCGGACTTTCTGTTACTGGTGTAGCTGGGCCCGGATATTCCGAGCGGAAGCCAGTCGGCCTGG
TGTATATTGGTATTGCTGAGCGCGACAAGGAAACGGAAGTATATGAGCTGAATTTAAGCGGTAACCGTGAGACCATCCGT
TTGCGATCCGTCAAAGCTATCTTGTACAGATTGTGGCGCCGATTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G8R3Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50

97.156

0.486
  cinA Streptococcus pneumoniae TIGR4

49.756

97.156

0.483
  cinA Streptococcus mitis NCTC 12261

49.512

97.156

0.481
  cinA Streptococcus pneumoniae Rx1

49.512

97.156

0.481
  cinA Streptococcus pneumoniae R6

49.512

97.156

0.481
  cinA Streptococcus pneumoniae D39

49.268

97.156

0.479
  cinA Bacillus subtilis subsp. subtilis str. 168

48.02

95.735

0.46
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41

Multiple sequence alignment