Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DEH83_RS04955 Genome accession   NZ_CP029207
Coordinates   977624..978892 (+) Length   422 a.a.
NCBI ID   WP_255777216.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 972624..983892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS04925 (DEH83_04920) - 973780..974289 (-) 510 WP_003071502.1 helix-turn-helix domain-containing protein -
  DEH83_RS04930 (DEH83_04925) ruvA 974451..975041 (+) 591 WP_255777231.1 Holliday junction branch migration protein RuvA -
  DEH83_RS04935 (DEH83_04930) - 975053..975607 (+) 555 WP_039677797.1 DNA-3-methyladenine glycosylase I -
  DEH83_RS04940 (DEH83_04935) - 975612..976271 (+) 660 WP_255777215.1 CPBP family intramembrane glutamic endopeptidase -
  DEH83_RS04945 (DEH83_04940) - 976343..976900 (+) 558 WP_039677799.1 GNAT family N-acetyltransferase -
  DEH83_RS04950 (DEH83_04945) - 976942..977352 (-) 411 WP_039677800.1 helix-turn-helix domain-containing protein -
  DEH83_RS04955 (DEH83_04950) cinA 977624..978892 (+) 1269 WP_255777216.1 competence/damage-inducible protein A Machinery gene
  DEH83_RS04960 (DEH83_04955) recA 978941..980086 (+) 1146 WP_006269775.1 recombinase RecA Machinery gene
  DEH83_RS04965 (DEH83_04960) spx 980173..980571 (+) 399 WP_003026638.1 transcriptional regulator Spx -
  DEH83_RS04970 (DEH83_04965) - 980656..981225 (+) 570 WP_037598406.1 SP0191 family lipoprotein -
  DEH83_RS04975 (DEH83_04970) - 981330..981887 (+) 558 WP_003071476.1 SP0191 family lipoprotein -
  DEH83_RS04980 (DEH83_04975) - 982011..982277 (+) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  DEH83_RS04985 (DEH83_04980) ruvX 982277..982696 (+) 420 WP_003071469.1 Holliday junction resolvase RuvX -
  DEH83_RS04990 (DEH83_04985) - 982714..983025 (+) 312 WP_003027765.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46080.80 Da        Isoelectric Point: 5.6379

>NTDB_id=291182 DEH83_RS04955 WP_255777216.1 977624..978892(+) (cinA) [Streptococcus constellatus strain TCV107]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNENRLLSILEIAKKRSDLVILCGGLGPTEDDLTKQV
LAKFLNRRLVFDQAAMEKLDRFFASRLDYVRTPNNERQAQIVEDSTSLQNETGLAVGGVIEVSGVTYVVLPGPPSELKPM
VNNELIPLLATDQKLYSRVLRFFGIGESQLVTLLGDLIDAQIDPTIAPYAKTGEVTLRLSTKASSQKEADTKFAYLEKKI
LAVQTFEKQRLVDLFYAYGDDNSLAQTTFELLRRAGKTVTAAESLTAGLFQATLANFSGASNVFSGGFVTYSMEEKSRML
DIPLADLKQYGVVSAFTAKKMAEQARKLTASDYAVSLTGVAGPDSLEGYPAGTVYIGLATTENVQSFKVNIAGRSRTDVR
KIAVLHAFNQLRKTLLKNENML

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=291182 DEH83_RS04955 WP_255777216.1 977624..978892(+) (cinA) [Streptococcus constellatus strain TCV107]
ATGAAAGCAGAAATTATTGCTGTAGGTACTGAAATTCTGACCGGGCAAATTGTCAATACGAATGCTCAATTTTTATCGGA
AAAATTAGCTAGTTTAGGGATTGATGTTTATTTCCAGACTGCTGTCGGTGATAATGAAAATCGTCTTTTATCTATTTTGG
AAATTGCAAAGAAACGGAGCGATCTTGTCATTCTTTGTGGTGGCTTGGGTCCAACAGAAGACGACTTGACCAAGCAGGTG
TTGGCAAAATTTTTAAATCGCAGGTTGGTCTTTGACCAAGCAGCTATGGAAAAATTAGATCGTTTCTTCGCGAGTCGACT
GGACTATGTTCGAACACCAAATAATGAGCGGCAAGCTCAGATAGTGGAAGATTCGACTTCTCTACAAAACGAAACCGGAC
TTGCGGTGGGGGGCGTGATTGAAGTAAGTGGTGTAACTTATGTTGTTCTGCCTGGTCCACCTAGTGAATTAAAACCTATG
GTGAACAATGAGCTGATTCCGCTTTTAGCAACGGATCAAAAATTGTATTCAAGAGTTTTGCGCTTCTTTGGCATTGGTGA
AAGTCAATTAGTAACTCTTTTAGGAGATTTAATTGATGCTCAGATCGATCCGACCATTGCTCCTTATGCTAAGACGGGAG
AGGTGACATTGCGATTGTCCACAAAGGCTAGCAGTCAAAAAGAAGCAGATACTAAGTTTGCTTATTTGGAAAAGAAAATT
TTAGCTGTACAGACTTTTGAGAAACAACGTTTAGTGGACCTTTTCTATGCTTATGGAGATGATAATTCTCTAGCGCAGAC
AACTTTTGAATTGTTGAGGAGAGCAGGCAAGACTGTTACAGCAGCCGAAAGTTTGACTGCTGGCCTTTTTCAAGCAACTT
TGGCAAACTTTTCTGGAGCCTCCAATGTCTTTAGTGGTGGCTTTGTTACTTACAGTATGGAGGAAAAGAGCCGCATGCTG
GACATTCCTTTGGCAGACTTGAAACAATATGGAGTTGTTTCTGCTTTTACAGCAAAGAAAATGGCTGAGCAGGCCAGAAA
ATTGACTGCCAGTGACTATGCAGTGAGTTTGACGGGTGTGGCAGGTCCAGACAGCTTAGAAGGATATCCGGCAGGGACAG
TTTATATTGGCTTAGCAACTACAGAGAATGTACAATCTTTTAAGGTTAATATTGCCGGTCGTAGTCGGACTGATGTACGA
AAAATAGCCGTTCTGCATGCTTTCAATCAGTTACGAAAAACTTTATTAAAAAACGAAAATATGCTATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.402

99.052

0.737
  cinA Streptococcus pneumoniae TIGR4

73.684

99.052

0.73
  cinA Streptococcus pneumoniae Rx1

73.684

99.052

0.73
  cinA Streptococcus pneumoniae R6

73.684

99.052

0.73
  cinA Streptococcus mitis NCTC 12261

73.445

99.052

0.727
  cinA Streptococcus pneumoniae D39

73.445

99.052

0.727
  cinA Streptococcus mutans UA159

71.158

100

0.713
  cinA Streptococcus suis isolate S10

55.769

98.578

0.55
  cinA Bacillus subtilis subsp. subtilis str. 168

45.215

99.052

0.448

Multiple sequence alignment