Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VIBHAR_RS16230 Genome accession   NC_009783
Coordinates   3524632..3525855 (+) Length   407 a.a.
NCBI ID   WP_012128878.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519632..3530855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS16210 (VIBHAR_03466) ampD 3520684..3521235 (-) 552 WP_012128874.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VIBHAR_RS16215 (VIBHAR_03467) nadC 3521328..3522215 (+) 888 WP_012128875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VIBHAR_RS16220 (VIBHAR_03468) - 3522480..3522905 (+) 426 WP_012128876.1 pilin -
  VIBHAR_RS16225 (VIBHAR_03469) pilB 3522912..3524597 (+) 1686 WP_012128877.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VIBHAR_RS16230 (VIBHAR_03470) pilC 3524632..3525855 (+) 1224 WP_012128878.1 type II secretion system F family protein Machinery gene
  VIBHAR_RS16235 (VIBHAR_03471) pilD 3525928..3526797 (+) 870 WP_012128879.1 prepilin peptidase Machinery gene
  VIBHAR_RS16240 (VIBHAR_03472) coaE 3526798..3527412 (+) 615 WP_012128880.1 dephospho-CoA kinase -
  VIBHAR_RS16245 (VIBHAR_03473) zapD 3527440..3528180 (+) 741 WP_012128881.1 cell division protein ZapD -
  VIBHAR_RS16250 (VIBHAR_03474) yacG 3528243..3528437 (+) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  VIBHAR_RS16255 (VIBHAR_03475) - 3528892..3529917 (-) 1026 WP_012128883.1 IS110 family transposase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44957.21 Da        Isoelectric Point: 10.3971

>NTDB_id=29036 VIBHAR_RS16230 WP_012128878.1 3524632..3525855(+) (pilC) [Vibrio campbellii ATCC BAA-1116]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEIEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCNVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=29036 VIBHAR_RS16230 WP_012128878.1 3524632..3525855(+) (pilC) [Vibrio campbellii ATCC BAA-1116]
ATGAAAACCATCGCTCCTCAACTCAAGAACTACCGTTGGAAAGGCATTAATAGCTCGGGTAAAAAAACCTCTGGAAACGT
GCTCGCCATGACCGAAATAGAGGTAAGAGAGCGCCTCGATGCTCAACACATTAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAATCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAAA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATAGGACTGAGTTTTGTGAGTCTGCTCATTTCCGGC
AAAATAATGTCGCAACGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCTGT
ATTATCCAAAGCAGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCTATGTATATTGCCATGCGGAACTGTAACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGACATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAAGTGGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.509

100

0.995
  pilC Vibrio cholerae strain A1552

74

98.28

0.727
  pilC Acinetobacter baylyi ADP1

42.714

97.789

0.418
  pilC Acinetobacter baumannii D1279779

40.695

99.017

0.403
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilC Legionella pneumophila strain ERS1305867

39.356

99.263

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment