Detailed information NTG0029037

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VIBHAR_RS16235
• Genome accession: NC_009783
• Coordinates: 3525928..3526797 (+)
• Length: 289 a.a.
• NCBI ID: WP_012128879.1
• Uniprot ID: -
• Organism: Vibrio campbellii ATCC BAA-1116
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3520928..3531797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VIBHAR_RS16215 (VIBHAR_03467)	nadC	3521328..3522215 (+)	888	WP_012128875.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VIBHAR_RS16220 (VIBHAR_03468)	-	3522480..3522905 (+)	426	WP_012128876.1	pilin	-
VIBHAR_RS16225 (VIBHAR_03469)	pilB	3522912..3524597 (+)	1686	WP_012128877.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VIBHAR_RS16230 (VIBHAR_03470)	pilC	3524632..3525855 (+)	1224	WP_012128878.1	type II secretion system F family protein	Machinery gene
VIBHAR_RS16235 (VIBHAR_03471)	pilD	3525928..3526797 (+)	870	WP_012128879.1	prepilin peptidase	Machinery gene
VIBHAR_RS16240 (VIBHAR_03472)	coaE	3526798..3527412 (+)	615	WP_012128880.1	dephospho-CoA kinase	-
VIBHAR_RS16245 (VIBHAR_03473)	zapD	3527440..3528180 (+)	741	WP_012128881.1	cell division protein ZapD	-
VIBHAR_RS16250 (VIBHAR_03474)	yacG	3528243..3528437 (+)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
VIBHAR_RS16255 (VIBHAR_03475)	-	3528892..3529917 (-)	1026	WP_012128883.1	IS110 family transposase	-
VIBHAR_RS16260 (VIBHAR_03476)	ltrA	3530150..3531364 (-)	1215	WP_012128884.1	group II intron reverse transcriptase/maturase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32503.75 Da
• Isoelectric Point: 7.5422

>NTDB_id=29037 VIBHAR_RS16235 WP_012128879.1 3525928..3526797(+) (pilD) [Vibrio campbellii ATCC BAA-1116]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKETLTLSVPRSSCQQCGTPIRIR
DNIPVISWLLLKGKCHNCQAPISARYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=29037 VIBHAR_RS16235 WP_012128879.1 3525928..3526797(+) (pilD) [Vibrio campbellii ATCC BAA-1116]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATATAAGA
TTGAACCACCCAAAGAGACGCTGACGTTAAGTGTACCTCGCTCGTCTTGTCAGCAATGCGGAACACCCATTCGCATCCGA
GACAACATTCCGGTAATTAGCTGGCTATTGCTGAAAGGCAAGTGCCACAACTGCCAAGCGCCCATCAGTGCTCGCTACCC
TCTTATTGAACTGCTTACTGCGTTTTGTTCGGGTTTTATCGCTTTTCATTTCGGTTTTAGCTACTTCACTGTAGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACCATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTATCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTCCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGTTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
TGGCTGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.616	100	0.986
pilD	Vibrio cholerae strain A1552	75.694	99.654	0.754
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439