Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VIBHAR_RS01820 Genome accession   NC_009783
Coordinates   371642..372751 (-) Length   369 a.a.
NCBI ID   WP_012126635.1    Uniprot ID   A7N119
Organism   Vibrio campbellii ATCC BAA-1116     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366642..377751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VIBHAR_RS01790 (VIBHAR_00383) hemF 367172..368089 (-) 918 WP_005535491.1 oxygen-dependent coproporphyrinogen oxidase -
  VIBHAR_RS01795 (VIBHAR_00384) - 368124..368681 (-) 558 WP_012126631.1 L-threonylcarbamoyladenylate synthase -
  VIBHAR_RS01800 (VIBHAR_00385) purE 368881..369366 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VIBHAR_RS01805 (VIBHAR_00386) - 369371..370504 (+) 1134 WP_012126633.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VIBHAR_RS01810 (VIBHAR_00387) - 370571..371137 (-) 567 WP_012126634.1 type I DNA topoisomerase -
  VIBHAR_RS01815 (VIBHAR_00388) - 371160..371639 (-) 480 WP_005429833.1 DUF494 family protein -
  VIBHAR_RS01820 (VIBHAR_00389) dprA 371642..372751 (-) 1110 WP_012126635.1 DNA-processing protein DprA Machinery gene
  VIBHAR_RS01825 (VIBHAR_00390) - 372735..373829 (-) 1095 WP_012126636.1 LysM peptidoglycan-binding domain-containing protein -
  VIBHAR_RS01830 (VIBHAR_00391) def 373968..374486 (+) 519 WP_005450979.1 peptide deformylase -
  VIBHAR_RS01835 (VIBHAR_00392) fmt 374520..375467 (+) 948 WP_005535506.1 methionyl-tRNA formyltransferase -
  VIBHAR_RS01840 (VIBHAR_00393) rsmB 375549..376832 (+) 1284 WP_012126637.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39374.05 Da        Isoelectric Point: 5.8166

>NTDB_id=29014 VIBHAR_RS01820 WP_012126635.1 371642..372751(-) (dprA) [Vibrio campbellii ATCC BAA-1116]
MTPQNDIDLAAWLKLSCLPGIGGVKLNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIKNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=29014 VIBHAR_RS01820 WP_012126635.1 371642..372751(-) (dprA) [Vibrio campbellii ATCC BAA-1116]
ATGACACCACAAAATGATATTGATCTCGCTGCCTGGTTAAAGCTTAGTTGTTTACCGGGCATCGGTGGGGTCAAGCTGAA
TAAGCTGCTCAGCAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTGGGCTTAACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACGTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGTTACAACATGCAA
GAACTTTTGCATCTGACTTGGTGCAACACGATCTGATCGTTACCAGTGGCTTAGCATTGGGTATTGATGGTCATGCTCAT
GATGGTGCGCTGTTGGCTGGCGGTAAAACCATCGCAGTGCTAGGTTCGGGGTTAGAACAAGTGTACCCAGCAAGACACCG
AGGTTTGGCGCAGCGAGTGGCTGAAAATGGAGCGCTTGTTTCTGAGTTTCGCCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGTAACCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTAAAAACGGGGCTTGTCTCGTACAAAATACCCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7N119

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

98.916

100

0.989
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.989

100

0.485
  dprA Haemophilus influenzae Rd KW20

45.115

94.309

0.425
  dprA Legionella pneumophila strain ERS1305867

46.505

89.16

0.415
  dprA Neisseria meningitidis strain C311

37.596

100

0.398
  dprA Neisseria meningitidis MC58

37.596

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.693

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

36.434

100

0.382

Multiple sequence alignment