Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DBX26_RS15245 Genome accession   NZ_CP028943
Coordinates   3249644..3250753 (-) Length   369 a.a.
NCBI ID   WP_118119664.1    Uniprot ID   -
Organism   Vibrio sp. dhg     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3244644..3255753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS15215 (DBX26_15190) hemF 3245100..3246017 (-) 918 WP_118119660.1 oxygen-dependent coproporphyrinogen oxidase -
  DBX26_RS15220 (DBX26_15195) - 3246066..3246623 (-) 558 WP_065303036.1 L-threonylcarbamoyladenylate synthase -
  DBX26_RS15225 (DBX26_15200) purE 3246828..3247313 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  DBX26_RS15230 (DBX26_15205) - 3247318..3248451 (+) 1134 WP_118119662.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  DBX26_RS15235 (DBX26_15210) - 3248512..3249081 (-) 570 WP_065297560.1 type I DNA topoisomerase -
  DBX26_RS15240 (DBX26_15215) - 3249162..3249641 (-) 480 WP_031779194.1 DUF494 family protein -
  DBX26_RS15245 (DBX26_15220) dprA 3249644..3250753 (-) 1110 WP_118119664.1 DNA-processing protein DprA Machinery gene
  DBX26_RS15250 (DBX26_15225) - 3250737..3251831 (-) 1095 WP_118119666.1 LysM peptidoglycan-binding domain-containing protein -
  DBX26_RS15255 (DBX26_15230) def 3251970..3252488 (+) 519 WP_014233386.1 peptide deformylase -
  DBX26_RS15260 (DBX26_15235) fmt 3252523..3253470 (+) 948 WP_118119667.1 methionyl-tRNA formyltransferase -
  DBX26_RS15265 (DBX26_15240) rsmB 3253553..3254836 (+) 1284 WP_118119669.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39962.82 Da        Isoelectric Point: 6.9675

>NTDB_id=288754 DBX26_RS15245 WP_118119664.1 3249644..3250753(-) (dprA) [Vibrio sp. dhg]
MKPLNENDLVAWLKLSCLPGIGGVKLNKLLAKDTPRNIINSSHEYLQRLGLSQKQLQAWTSADKEVEACLNWKELASSHH
ILTLDDPLYPPLLKQIVAPPPLLFLQGDPTCLSQPQIAMVGSRNASVDGLHYARHFAADFVSNDLIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLAHIYPARHRGLAQRVAESGALISEFRPNAKPRPEHFPRRNRIISGLSLGVFVVEAAEKSGSL
ITARYALEQGREVFALPASINAKNASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQSRDLFSTLIDEEELPFPQLLA
NVGHEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=288754 DBX26_RS15245 WP_118119664.1 3249644..3250753(-) (dprA) [Vibrio sp. dhg]
ATGAAACCACTCAATGAGAATGACCTTGTTGCCTGGCTAAAGCTAAGTTGCTTGCCAGGCATAGGTGGGGTCAAGCTGAA
TAAGTTACTCGCTAAAGATACACCTCGAAACATCATCAACTCCTCTCATGAATACCTGCAGCGCCTTGGATTAAGTCAGA
AGCAACTTCAGGCTTGGACGTCAGCCGATAAAGAAGTTGAAGCTTGCCTCAATTGGAAAGAGCTCGCTTCGAGTCACCAT
ATTCTGACTTTAGATGACCCGCTTTACCCTCCGCTACTTAAACAGATTGTTGCACCGCCGCCACTATTGTTTTTGCAAGG
CGATCCTACGTGTTTATCTCAGCCTCAGATTGCTATGGTGGGAAGCCGTAACGCGAGTGTTGACGGATTGCATTATGCTC
GTCATTTTGCTGCAGACTTCGTTAGTAATGATCTTATTGTAACCAGTGGATTAGCTTTGGGCATTGATGGCCATGCGCAT
GACGGAGCGTTGCAAGCGGGAGGAAAGACGATCGCGGTTCTTGGTTCTGGCTTAGCTCATATTTACCCTGCCCGGCACCG
TGGGTTGGCGCAGCGCGTCGCAGAGAGCGGTGCACTGATTTCAGAATTTCGCCCCAATGCGAAACCAAGGCCGGAACACT
TTCCACGTCGCAACCGAATTATTAGTGGGTTATCTCTGGGGGTGTTTGTTGTCGAAGCGGCAGAGAAAAGCGGTTCTTTA
ATTACGGCCCGTTATGCGCTTGAGCAAGGACGAGAAGTGTTTGCTCTGCCTGCTTCTATTAATGCGAAAAATGCCAGTGG
CGGAAATCATTTGATTCGCAATGGTGCTTGCCTCGTAGAAAAGACAAAAGATGTACTCGATGAAATACAGTCATTGCTTG
ATTGGTCTGTTAATCAGAGCAGAGATTTATTTTCTACCTTAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGACATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCACGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(79-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.114

100

0.821
  dprA Vibrio cholerae strain A1552

56.873

100

0.572
  dprA Glaesserella parasuis strain SC1401

45.553

100

0.458
  dprA Legionella pneumophila strain ERS1305867

44.321

97.832

0.434
  dprA Haemophilus influenzae Rd KW20

42.939

94.038

0.404
  dprA Neisseria meningitidis strain C311

35.516

100

0.382
  dprA Neisseria meningitidis MC58

35.516

100

0.382
  dprA Neisseria gonorrhoeae MS11

34.684

100

0.371
  dprA Neisseria gonorrhoeae strain FA1090

34.43

100

0.369

Multiple sequence alignment