Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   DBO93_RS16090 Genome accession   NZ_CP028924
Coordinates   3739379..3740632 (+) Length   417 a.a.
NCBI ID   WP_108457250.1    Uniprot ID   -
Organism   Colwellia sp. Arc7-D     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3734379..3745632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBO93_RS16065 (DBO93_16065) ampD 3734401..3734994 (-) 594 WP_108457246.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DBO93_RS16070 (DBO93_16070) - 3735100..3735621 (+) 522 WP_108457247.1 TIGR02281 family clan AA aspartic protease -
  DBO93_RS16075 (DBO93_16075) nadC 3735622..3736509 (+) 888 WP_108457248.1 carboxylating nicotinate-nucleotide diphosphorylase -
  DBO93_RS16080 (DBO93_16080) - 3736872..3737318 (+) 447 WP_108457249.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DBO93_RS16085 (DBO93_16085) pilB 3737451..3739156 (+) 1706 Protein_3137 type IV-A pilus assembly ATPase PilB -
  DBO93_RS16090 (DBO93_16090) pilC 3739379..3740632 (+) 1254 WP_108457250.1 type II secretion system F family protein Machinery gene
  DBO93_RS16095 (DBO93_16095) pilD 3740765..3741637 (+) 873 WP_108457893.1 A24 family peptidase Machinery gene
  DBO93_RS16100 (DBO93_16100) coaE 3741744..3742358 (+) 615 WP_108457251.1 dephospho-CoA kinase -
  DBO93_RS16105 (DBO93_16105) zapD 3742477..3743223 (+) 747 WP_108457252.1 cell division protein ZapD -
  DBO93_RS16110 (DBO93_16110) yacG 3743379..3743615 (+) 237 WP_108457253.1 DNA gyrase inhibitor YacG -
  DBO93_RS16115 (DBO93_16115) mutT 3743692..3744090 (-) 399 WP_204100692.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45141.23 Da        Isoelectric Point: 9.4060

>NTDB_id=288593 DBO93_RS16090 WP_108457250.1 3739379..3740632(+) (pilC) [Colwellia sp. Arc7-D]
MAVTSTKTKDKKSKVKSVDVYKWQGLNRKGKKISGELNATSILELKAQLRKQGITPGKISKKAKPLFGLGGDKKILPADI
AVVTRQIATMLGAGVPLVQTIEMISSGHSNGNMQKLLSTIGNKLQSGIPLSECLREHPQYFDDLYCDLVNSGEQSGALET
IYDRVATYKEKAEALKAKIKKAMTYPISVLVIAFVVTAILLIFVVPVFQEIFANFGAELPAFTLLVIAISEFMQAYWYFG
LAAIFAAGYFFKKAHLNSLSFRDSVDKKILKLPIIGDVLKKAAVARYARTLSTTFAAGVPLPDALESAAGASGNAVFRDA
ILEIRAEVTSGMQMNLAMRNCAIFPDMVIQMVAIGEESGAVDDMLAKVATVYEQEVDNAVDNLTTLLEPMIMAVLGVVIG
GLIIAMYLPIFQIGMVV

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=288593 DBO93_RS16090 WP_108457250.1 3739379..3740632(+) (pilC) [Colwellia sp. Arc7-D]
ATGGCTGTTACTTCGACAAAAACAAAAGATAAAAAAAGCAAAGTCAAATCAGTAGATGTTTATAAATGGCAAGGTCTCAA
TCGTAAAGGTAAAAAAATAAGTGGTGAGCTAAATGCCACCAGTATTTTAGAGCTTAAAGCCCAGTTACGTAAGCAAGGTA
TAACGCCTGGTAAAATCAGTAAAAAGGCTAAACCATTATTTGGCTTAGGAGGCGATAAAAAAATCCTCCCGGCAGACATC
GCCGTAGTCACTCGTCAAATTGCCACTATGCTAGGCGCAGGCGTACCTTTAGTACAAACCATTGAAATGATTAGCTCAGG
CCACAGCAATGGCAATATGCAGAAGTTACTGAGTACTATAGGTAATAAATTACAATCTGGTATCCCGCTTTCTGAGTGCT
TGCGCGAACATCCACAATACTTTGATGACTTATATTGTGATTTGGTCAACTCTGGTGAGCAATCAGGTGCGCTTGAAACT
ATATATGACCGGGTTGCCACATATAAAGAAAAGGCAGAAGCGTTAAAAGCCAAAATTAAAAAAGCGATGACTTATCCCAT
TTCTGTATTAGTCATCGCTTTTGTTGTAACCGCTATTTTATTAATATTTGTTGTCCCTGTATTCCAAGAAATATTTGCAA
ACTTTGGGGCTGAGTTACCTGCGTTCACTTTATTAGTTATAGCAATATCTGAATTTATGCAGGCTTATTGGTACTTTGGT
CTTGCGGCTATTTTTGCTGCAGGATATTTCTTTAAAAAAGCACATTTAAACAGCCTTAGTTTTCGTGATAGCGTAGATAA
GAAAATATTAAAGCTTCCAATCATTGGTGATGTACTTAAAAAAGCTGCAGTTGCTCGTTATGCTCGAACACTTTCAACAA
CCTTTGCCGCCGGTGTGCCTTTGCCCGATGCACTAGAATCTGCTGCTGGCGCTTCAGGTAATGCAGTTTTTCGTGATGCT
ATACTAGAAATACGCGCTGAAGTTACTTCTGGTATGCAAATGAATTTAGCCATGCGAAATTGTGCCATATTCCCCGATAT
GGTTATTCAAATGGTTGCTATTGGTGAAGAGTCTGGCGCCGTTGATGATATGTTAGCTAAAGTCGCGACAGTTTATGAGC
AAGAAGTCGATAATGCGGTTGATAACTTAACCACTTTATTAGAGCCTATGATAATGGCTGTTTTAGGTGTGGTTATCGGT
GGTTTGATTATTGCCATGTATTTACCGATTTTTCAAATTGGTATGGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-206)

Type II secretion system (T2SS), protein F (T2SSF)

(288-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.814

95.444

0.6
  pilC Acinetobacter baumannii D1279779

54.95

96.882

0.532
  pilC Acinetobacter baylyi ADP1

54.455

96.882

0.528
  pilC Legionella pneumophila strain ERS1305867

54.156

95.204

0.516
  pilC Vibrio cholerae strain A1552

45.802

94.245

0.432
  pilC Vibrio campbellii strain DS40M4

43.687

94.964

0.415
  pilG Neisseria meningitidis 44/76-A

44.444

92.806

0.412
  pilG Neisseria gonorrhoeae MS11

44.186

92.806

0.41

Multiple sequence alignment