Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   C5B40_RS08655 Genome accession   NZ_CP028917
Coordinates   1805632..1807332 (-) Length   566 a.a.
NCBI ID   WP_009875880.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain JB2     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1800632..1812332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5B40_RS08615 - 1800797..1801222 (+) 426 WP_003103865.1 GNAT family N-acetyltransferase -
  C5B40_RS08620 - 1801219..1801689 (+) 471 WP_003094664.1 hypothetical protein -
  C5B40_RS08625 - 1801686..1802375 (+) 690 WP_003103868.1 energy-coupling factor ABC transporter permease -
  C5B40_RS08630 - 1802481..1802690 (+) 210 WP_003094660.1 hypothetical protein -
  C5B40_RS08635 yacG 1802727..1802927 (-) 201 WP_017148551.1 DNA gyrase inhibitor YacG -
  C5B40_RS08640 coaE 1802924..1803535 (-) 612 WP_003094654.1 dephospho-CoA kinase -
  C5B40_RS08645 pilD 1803532..1804404 (-) 873 WP_003125204.1 type IV prepilin peptidase/methyltransferase PilD Machinery gene
  C5B40_RS08650 pilC 1804408..1805628 (-) 1221 WP_016253888.1 type 4a pilus biogenesis protein PilC Machinery gene
  C5B40_RS08655 pilB 1805632..1807332 (-) 1701 WP_009875880.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C5B40_RS08660 pilA 1807561..1808013 (+) 453 WP_024947914.1 pilin Machinery gene
  C5B40_RS08670 nadC 1808201..1809049 (-) 849 WP_024947913.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C5B40_RS08675 - 1809335..1811590 (+) 2256 WP_016264271.1 DUF1631 domain-containing protein -
  C5B40_RS08680 ampD 1811741..1812307 (+) 567 WP_003112844.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 62383.27 Da        Isoelectric Point: 5.5590

>NTDB_id=288519 C5B40_RS08655 WP_009875880.1 1805632..1807332(-) (pilB) [Pseudomonas aeruginosa strain JB2]
MNDSIQLSGLSRQLVQANLLDEKTALQAQTQAQRNKLSLVTHLVQNKLVSGLALAELSAEQFGIAYCDLNSLDRESFPRD
AISEKLVRQHRVIPLWRRGNKLFVGISDAANHQAINDVQFSTGLTTEAILVEDDKLGLAIDKLFENATDGLAGLDDVDLE
GLDVGVKETSGQEDTGAEADDAPVVRFVNKMLLDAIKGGSSDLHFEPYEKIYRVRFRTDGMLHEVAKPPIQLASRISARL
KVMAGLDISERRKPQDGRIKMRVSKTKSIDFRVNTLPTLWGEKIVMRILDSSSAQMGIDALGYEEDQKELYLAALKQPQG
MILVTGPTGSGKTVSLYTGLNILNTTDINISTAEDPVEINLEGINQVNVNPRQGMDFSQALRAFLRQDPDVIMVGEIRDL
ETAEIAIKAAQTGHMVMSTLHTNSAAETLTRLLNMGVPAFNLATSVNLIIAQRLARKLCSHCKKEHDVPKETLLHEGFPE
ELIGTFKLYSPVGCDHCKNGYKGRVGIYEVVKNTPALQRIIMEEGNSIEIAEQARKEGFNDLRTSGLLKAMQGITSLEEV
NRVTKD

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=288519 C5B40_RS08655 WP_009875880.1 1805632..1807332(-) (pilB) [Pseudomonas aeruginosa strain JB2]
ATGAACGACAGCATCCAACTGAGCGGTCTGTCCCGACAGCTCGTCCAAGCCAATCTACTCGACGAAAAGACCGCCCTGCA
GGCCCAGACGCAGGCGCAGCGCAACAAGCTGTCGCTGGTGACGCACCTGGTGCAGAACAAGCTGGTAAGCGGCCTGGCCC
TGGCCGAATTGTCCGCCGAGCAGTTCGGCATCGCCTATTGCGACCTGAACAGCCTGGACAGGGAAAGCTTTCCGCGGGAC
GCCATCAGCGAAAAGCTGGTCCGCCAGCACCGGGTCATTCCCCTGTGGCGACGGGGCAACAAGTTGTTCGTAGGCATCTC
CGACGCCGCCAACCACCAGGCCATCAACGACGTCCAGTTCAGCACTGGCCTGACGACCGAGGCCATTCTGGTCGAGGACG
ACAAGCTCGGCCTTGCCATCGACAAGCTATTCGAGAATGCAACCGACGGCTTGGCAGGTCTCGATGACGTGGACCTGGAA
GGACTGGATGTAGGCGTCAAGGAAACGTCCGGACAAGAAGATACTGGCGCGGAGGCAGACGACGCTCCCGTCGTCCGCTT
CGTCAACAAGATGCTGCTGGACGCTATCAAAGGCGGGTCTTCCGACTTGCACTTCGAGCCCTACGAGAAGATCTACCGGG
TGCGCTTCCGTACCGACGGCATGCTTCACGAAGTGGCCAAGCCGCCGATCCAGTTGGCCAGTCGTATCTCTGCTCGTCTC
AAGGTAATGGCCGGCCTGGATATCTCCGAACGACGCAAGCCGCAGGACGGACGGATCAAGATGCGCGTGTCGAAGACCAA
GTCCATCGACTTCCGCGTCAACACCCTGCCGACCCTGTGGGGCGAGAAGATCGTGATGCGGATCCTCGACTCCTCCAGCG
CGCAGATGGGCATCGACGCCCTGGGCTACGAGGAGGACCAGAAGGAACTCTACCTGGCCGCACTCAAGCAGCCGCAGGGC
ATGATCCTGGTCACCGGCCCCACCGGCTCGGGCAAGACGGTATCGCTGTACACCGGTCTGAACATCCTCAATACCACCGA
CATCAACATTTCCACCGCCGAAGACCCGGTGGAGATCAACCTGGAAGGCATCAACCAGGTCAACGTCAATCCGCGCCAGG
GCATGGACTTCTCCCAGGCGCTGCGCGCCTTCCTGCGCCAGGACCCGGATGTGATCATGGTCGGCGAGATCCGCGACCTG
GAGACCGCCGAGATCGCCATCAAGGCGGCGCAGACCGGGCATATGGTGATGTCCACCCTGCACACCAACAGCGCCGCCGA
GACCCTGACCCGCCTGCTGAACATGGGCGTACCGGCGTTCAACCTGGCGACCTCGGTGAACCTGATCATCGCCCAGCGCC
TTGCGCGAAAACTCTGTTCGCACTGCAAGAAAGAGCACGACGTACCGAAGGAAACCCTGCTTCACGAAGGTTTCCCAGAA
GAGTTGATCGGCACCTTCAAGCTGTATTCACCAGTGGGCTGCGACCATTGCAAGAACGGTTACAAGGGCCGTGTCGGTAT
TTATGAAGTAGTTAAAAACACCCCGGCCCTGCAGCGGATTATCATGGAGGAAGGCAACTCCATCGAGATCGCCGAGCAAG
CCCGCAAAGAAGGCTTCAACGATCTGCGCACCTCAGGCCTGCTGAAAGCCATGCAGGGGATCACCAGCCTGGAGGAAGTC
AACCGCGTGACCAAGGATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(43-146)

Type II/IV secretion system protein (T2SSE)

(190-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

57.719

100

0.581
  pilB Acinetobacter baylyi ADP1

57.371

99.47

0.571
  pilB Legionella pneumophila strain ERS1305867

54.77

100

0.548
  pilF Neisseria gonorrhoeae MS11

50.534

99.293

0.502
  pilB Vibrio parahaemolyticus RIMD 2210633

50.444

99.47

0.502
  pilB Vibrio cholerae strain A1552

50

100

0.5
  pilB Vibrio campbellii strain DS40M4

49.113

99.647

0.489
  pilF Thermus thermophilus HB27

39.855

97.527

0.389
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.417

93.11

0.376

Multiple sequence alignment