Detailed information NTG0288517

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C5B40_RS08645
• Genome accession: NZ_CP028917
• Coordinates: 1803532..1804404 (-)
• Length: 290 a.a.
• NCBI ID: WP_003125204.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain JB2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1798532..1809404

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5B40_RS08600	-	1799393..1799563 (-)	171	WP_003094672.1	DUF3094 family protein	-
C5B40_RS08605	-	1799589..1800038 (-)	450	WP_003094670.1	MOSC domain-containing protein	-
C5B40_RS08610	-	1800035..1800664 (-)	630	WP_023098063.1	DUF1780 domain-containing protein	-
C5B40_RS08615	-	1800797..1801222 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
C5B40_RS08620	-	1801219..1801689 (+)	471	WP_003094664.1	hypothetical protein	-
C5B40_RS08625	-	1801686..1802375 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
C5B40_RS08630	-	1802481..1802690 (+)	210	WP_003094660.1	hypothetical protein	-
C5B40_RS08635	yacG	1802727..1802927 (-)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
C5B40_RS08640	coaE	1802924..1803535 (-)	612	WP_003094654.1	dephospho-CoA kinase	-
C5B40_RS08645	pilD	1803532..1804404 (-)	873	WP_003125204.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
C5B40_RS08650	pilC	1804408..1805628 (-)	1221	WP_016253888.1	type 4a pilus biogenesis protein PilC	Machinery gene
C5B40_RS08655	pilB	1805632..1807332 (-)	1701	WP_009875880.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C5B40_RS08660	pilA	1807561..1808013 (+)	453	WP_024947914.1	pilin	Machinery gene
C5B40_RS08670	nadC	1808201..1809049 (-)	849	WP_024947913.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31839.89 Da
• Isoelectric Point: 7.7068

>NTDB_id=288517 C5B40_RS08645 WP_003125204.1 1803532..1804404(-) (pilD) [Pseudomonas aeruginosa strain JB2]
MPLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=288517 C5B40_RS08645 WP_003125204.1 1803532..1804404(-) (pilD) [Pseudomonas aeruginosa strain JB2]
ATGCCCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472